RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TBX20Q9UMR3 447 aa22.55■■□□□ 1.2
CCDC88B-203ENST00000359902 GOLGA8IPA6NC78 632 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 GOLGA8JA6NMD2 632 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 ANKRD63C9JTQ0 380 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 GOLGA8KD6RF30 607 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 PMM2O15305 246 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 SART1O43290 800 aaKnown RBP22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 CLSTN1O94985 981 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 IQCKQ8N0W5 287 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 MREGQ8N565 214 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 FAM76AQ8TAV0 307 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 ZIM3Q96PE6 472 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 CNOT7Q9UIV1 285 aaKnown RBP22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 USP20Q9Y2K6 914 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 FAM170AA1A519 330 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 CCDC169A6NNP5 214 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 KRIT1O00522 736 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 NR3C2P08235 984 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 CCND2P30279 289 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 NPTX2P47972 431 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 GUCY2FP51841 1108 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 ERVK-9P63128 1117 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 SF3B2Q13435 895 aaKnown RBP22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 ZNF746Q6NUN9 644 aaPredicted RBP22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 NLRX1Q86UT6 975 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 SCYL3Q8IZE3 742 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 REPS2Q8NFH8 660 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 RDM1Q8NG50 284 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 WHAMMQ8TF30 809 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 ZKSCAN4Q969J2 545 aaPredicted RBP22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 SENP7Q9BQF6 1050 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 TAF1DQ9H5J8 278 aaPredicted RBP22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 PCDHA10Q9Y5I2 948 aa22.54■■□□□ 1.2
CCDC88B-203ENST00000359902 BHMG1C9JSJ3 638 aaPredicted RBP22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 CCDC188H7C350 402 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 DDX3YO15523 660 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 ITGA4P13612 1032 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 CBWD2Q8IUF1 395 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 EIF1ADQ8N9N8 165 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 GPRASP2Q96D09 838 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 ISCUQ9H1K1 167 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 ZNF112Q9UJU3 913 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 COG5Q9UP83 839 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 EXOC7Q9UPT5 735 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 MXI1P50539 228 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 SMTNP53814 917 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 ZNF280CQ8ND82 737 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 KAT5Q92993 513 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 KIFC3Q9BVG8 833 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 DDX47Q9H0S4 455 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 TTC7AQ9ULT0 858 aaPredicted RBP22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 PARP14Q460N5 1801 aa22.53■■□□□ 1.2
CCDC88B-203ENST00000359902 PTPRAP18433 802 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 CNGA1P29973 690 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 PPFIA1Q13136 1202 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 SNRNP35Q16560 246 aaKnown RBP22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 DCAF15Q66K64 600 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 MAP4K3Q8IVH8 894 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 MAFGO15525 162 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 ZNF862O60290 1169 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 DMP1Q13316 513 aaPredicted RBP22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 SNRNP48Q6IEG0 339 aaKnown RBP22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 LRRC31Q6UY01 552 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 PROCA1Q8NCQ7 364 aaPredicted RBP22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 PIK3R5Q8WYR1 880 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 BSNDQ8WZ55 320 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 ARL8AQ96BM9 186 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 RUFY1Q96T51 708 aa22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 NTPCRQ9BSD7 190 aaKnown RBP22.52■■□□□ 1.2
CCDC88B-203ENST00000359902 STBD1O95210 358 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 ZBTB7AO95365 584 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 FTLP02792 175 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 ECHS1P30084 290 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 CFAP58Q5T655 872 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 DCAF12L1Q5VU92 463 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 RPUSD2Q8IZ73 545 aaKnown RBP22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 HVCN1Q96D96 273 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 SAAL1Q96ER3 474 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 AS3MTQ9HBK9 375 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 GABBR1Q9UBS5 961 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 ADAMTS5Q9UNA0 930 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 GJA3Q9Y6H8 435 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 DENND3A2RUS2 1198 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 RGS20O76081 388 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 KCNA2P16389 499 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 HADHBP55084 474 aaKnown RBP22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 MAP2K1Q02750 393 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 CUL1Q13616 776 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 TTMPQ5BVD1 217 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 OTUD6AQ7L8S5 288 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 FAM71AQ8IYT1 594 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 SEMA4DQ92854 862 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 KREMEN1Q96MU8 473 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 KMT5AQ9NQR1 393 aa22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 ZNF214Q9UL59 606 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 DIS3Q9Y2L1 958 aaKnown RBP22.51■■□□□ 1.19
CCDC88B-203ENST00000359902 DOCK1Q14185 1865 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 SGPL1O95470 568 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 DSG3P32926 999 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms