RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ZMYND10O75800 440 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 SLC1A1P43005 524 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 DYNC1I2Q13409 638 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 SNX17Q15036 470 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 KNOP1Q1ED39 458 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 HABP4Q5JVS0 413 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 C1orf146Q5VVC0 180 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 MMS22LQ6ZRQ5 1243 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 SFR1Q86XK3 245 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 UNC5CLQ8IV45 518 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 GPD1LQ8N335 351 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 SCFD1Q8WVM8 642 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 OSBP2Q969R2 916 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 TNIP3Q96KP6 325 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 NUP85Q9BW27 656 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 INTS2Q9H0H0 1204 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 WARS2Q9UGM6 360 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 PALLDQ8WX93 1383 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 GH2P01242 217 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 GFAPP14136 432 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 QARSP47897 775 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 ZNF235Q14590 738 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 GRM4Q14833 912 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 FAM83BQ5T0W9 1011 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 SNRNP48Q6IEG0 339 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 TTC30AQ86WT1 665 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 PDCD6IPQ8WUM4 868 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 DACH2Q96NX9 599 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 FAM129AQ9BZQ8 928 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 PARVAQ9NVD7 372 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 SENP1Q9P0U3 644 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 INPP5FQ9Y2H2 1132 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 UTYO14607 1347 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 APOL1O14791 398 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 TRAPPC3O43617 180 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 CHGBP05060 677 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 IL10P22301 178 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 SERPINB10P48595 397 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 POLE2P56282 527 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 PSMC1P62191 440 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 COASYQ13057 564 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 RASGRF1Q13972 1273 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 DHX34Q14147 1143 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 TRIM60Q495X7 471 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 BTBD8Q5XKL5 378 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 GFM2Q969S9 779 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 DCUN1D1Q96GG9 259 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 ACAD9Q9H845 621 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 PIH1D3Q9NQM4 214 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 ABHD10Q9NUJ1 306 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 ADAMTS1Q9UHI8 967 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 KCNH4Q9UQ05 1017 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 UGGT1Q9NYU2 1555 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 FRMD3A2A2Y4 597 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 USP17L10C9JJH3 530 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 STXBP3O00186 592 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 PRPF4O43172 522 aaKnown RBP eCLIP6.86□□□□□ -1.31
UPF2-201ENST00000356352 NEK2P51955 445 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 CDK17Q00537 523 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 CC2D1AQ6P1N0 951 aaPredicted RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 LRRC8BQ6P9F7 803 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 BANK1Q8NDB2 785 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 ARHGEF1Q92888 912 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 TSPAN17Q96FV3 270 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 EEF2KMTQ96G04 330 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.86□□□□□ -1.313e-11■■□□□ 12.6
UPF2-201ENST00000356352 FAM213AQ9BRX8 229 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 POLR3FQ9H1D9 316 aaPredicted RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 MTIF3Q9H2K0 278 aaKnown RBP6.86□□□□□ -1.31
UPF2-201ENST00000356352 ANTXR1Q9H6X2 564 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 PPCSQ9HAB8 311 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 ABCB6Q9NP58 842 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 CASS4Q9NQ75 786 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 NRBP1Q9UHY1 535 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 PBRM1Q86U86 1689 aa6.86□□□□□ -1.31
UPF2-201ENST00000356352 A0A1B0GW55 424 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 SLC16A3O15427 465 aaKnown RBP6.85□□□□□ -1.31
UPF2-201ENST00000356352 KDM1AO60341 852 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 RPS6KA4O75676 772 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 DUX4L2P0CJ85 424 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 DUX4L3P0CJ86 424 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 DUX4L4P0CJ87 422 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 DUX4L5P0CJ88 424 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 DUX4L6P0CJ89 424 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 DUX4L7P0CJ90 424 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 HSPA1AP0DMV8 641 aaKnown RBP6.85□□□□□ -1.31
UPF2-201ENST00000356352 HSPA1BP0DMV9 641 aaKnown RBP6.85□□□□□ -1.31
UPF2-201ENST00000356352 FCER1AP12319 257 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 CDH2P19022 906 aaPredicted RBP6.85□□□□□ -1.31
UPF2-201ENST00000356352 ARFIP2P53365 341 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 PTPN12Q05209 780 aaKnown RBP6.85□□□□□ -1.31
UPF2-201ENST00000356352 AP1B1Q10567 949 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 TKFCQ3LXA3 575 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 MEI1Q5TIA1 1274 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 TAS2R42Q7RTR8 314 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 GTF3C2Q8WUA4 911 aaPredicted RBP6.85□□□□□ -1.31
UPF2-201ENST00000356352 TSC22D3Q99576 134 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 ELAC2Q9BQ52 826 aaKnown RBP6.85□□□□□ -1.31
UPF2-201ENST00000356352 GOLPH3LQ9H4A5 285 aa6.85□□□□□ -1.31
UPF2-201ENST00000356352 NSMCE4AQ9NXX6 385 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms