RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 USP17L15C9J2P7 530 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 USP17L13C9JLJ4 530 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 USP17L11C9JVI0 530 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 USP17L18D6R9N7 530 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 USP17L22D6RA61 530 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 USP17L17D6RBQ6 530 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 USP17L19D6RCP7 530 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 USP17L20D6RJB6 530 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 USP17L24Q0WX57 530 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 SKIV2LQ15477 1246 aaKnown RBP24.55■■□□□ 1.52
NPAS3-201ENST00000346562 USP17L6PQ6QN14 398 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 A0A087WUV0 522 aaPredicted RBP24.55■■□□□ 1.52
NPAS3-201ENST00000346562 PRPF4O43172 522 aaKnown RBP eCLIP24.55■■□□□ 1.52
NPAS3-201ENST00000346562 MOCS2O96007 188 aaPredicted RBP24.55■■□□□ 1.52
NPAS3-201ENST00000346562 CYBBP04839 570 aa24.55■■□□□ 1.52
NPAS3-201ENST00000346562 DNAJC6O75061 913 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 ZNF235Q14590 738 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 TTC37Q6PGP7 1564 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 IQCA1LA6NCM1 817 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 TADA3O75528 432 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 ZC3H12BQ5HYM0 836 aaKnown RBP24.54■■□□□ 1.52
NPAS3-201ENST00000346562 PPP2R3CQ969Q6 453 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 EPAS1Q99814 870 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 SYCE1LA8MT33 242 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 POU5F1BQ06416 359 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 EFTUD2Q15029 972 aaKnown RBP eCLIP24.54■■□□□ 1.52
NPAS3-201ENST00000346562 E2F5Q15329 346 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 PDXDC1Q6P996 788 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 SNX24Q9Y343 169 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 LRRC53A6NM62 1247 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 ATP5HO75947 161 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 ROBO2Q9HCK4 1378 aa24.54■■□□□ 1.52
NPAS3-201ENST00000346562 MMEP08473 750 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 NAF1Q96HR8 494 aaKnown RBP24.53■■□□□ 1.52
NPAS3-201ENST00000346562 CASS4Q9NQ75 786 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 CDHR2Q9BYE9 1310 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 ADGRL3Q9HAR2 1447 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 KCNH2Q12809 1159 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 TBC1D10CQ8IV04 446 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 AFF4Q9UHB7 1163 aaKnown RBP24.53■■□□□ 1.52
NPAS3-201ENST00000346562 A0A087WWV3 80 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 GOLGA8MH3BSY2 632 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 ZNF197O14709 1029 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 AARSP49588 968 aaKnown RBP eCLIP24.53■■□□□ 1.52
NPAS3-201ENST00000346562 NECTIN1Q15223 517 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 KIF12Q96FN5 646 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 PCDHB8Q9UN66 801 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 CASP8Q14790 479 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 HLFQ16534 295 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 OR9Q1Q8NGQ5 310 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 LXNQ9BS40 222 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 KDM4CQ9H3R0 1056 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 SNX5Q9Y5X3 404 aa24.53■■□□□ 1.52
NPAS3-201ENST00000346562 NKX1-1Q15270 411 aaPredicted RBP24.52■■□□□ 1.52
NPAS3-201ENST00000346562 ZNF467Q7Z7K2 595 aaPredicted RBP24.52■■□□□ 1.52
NPAS3-201ENST00000346562 CCNYL1Q8N7R7 359 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 OTUB1Q96FW1 271 aaPredicted RBP24.52■■□□□ 1.52
NPAS3-201ENST00000346562 OVOS2A0A0G2JMS6 1433 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 OVOS2A0A0J9YW53 1432 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 OVOS2Q6IE36 1432 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 PATL1Q86TB9 770 aaKnown RBP24.52■■□□□ 1.52
NPAS3-201ENST00000346562 RAPGEF5Q92565 580 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 CEP95Q96GE4 821 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 SPON2Q9BUD6 331 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 TJP2Q9UDY2 1190 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 ZFP69BQ9UJL9 534 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 ERVK-7P63135 1459 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 GYG2O15488 501 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 HDLBPQ00341 1268 aaKnown RBP24.52■■□□□ 1.52
NPAS3-201ENST00000346562 TMEM259Q4ZIN3 620 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 TNIP3Q96KP6 325 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 ABHD10Q9NUJ1 306 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 PCSK1NQ9UHG2 260 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 DFFAO00273 331 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 CDC42EP1Q00587 391 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 THEMIS2Q5TEJ8 643 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 ING2Q9H160 280 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 BFARQ9NZS9 450 aa24.52■■□□□ 1.52
NPAS3-201ENST00000346562 POTEB3A0JP26 581 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 POTECB2RU33 542 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 PRDX5P30044 214 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 EFNA5P52803 228 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 CDK17Q00537 523 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 SPP2Q13103 211 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 GTF2H3Q13889 308 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 FLOT2Q14254 428 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 AP1ARQ63HQ0 302 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 POTEBQ6S5H4 581 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 RAET1EQ8TD07 263 aa24.52■■□□□ 1.51
NPAS3-201ENST00000346562 MTIF3Q9H2K0 278 aaKnown RBP24.52■■□□□ 1.51
NPAS3-201ENST00000346562 RBAKQ9NYW8 714 aaPredicted RBP24.52■■□□□ 1.51
NPAS3-201ENST00000346562 UBA6A0AVT1 1052 aaPredicted RBP24.51■■□□□ 1.51
NPAS3-201ENST00000346562 WASHC5Q12768 1159 aa24.51■■□□□ 1.51
NPAS3-201ENST00000346562 ADGRF4Q8IZF3 695 aa24.51■■□□□ 1.51
NPAS3-201ENST00000346562 CHAMP1Q96JM3 812 aa24.51■■□□□ 1.51
NPAS3-201ENST00000346562 EML4Q9HC35 981 aaKnown RBP24.51■■□□□ 1.51
NPAS3-201ENST00000346562 TRAPPC3O43617 180 aa24.51■■□□□ 1.51
NPAS3-201ENST00000346562 SYF2O95926 243 aaKnown RBP24.51■■□□□ 1.51
NPAS3-201ENST00000346562 SPATA2LQ8IUW3 424 aaPredicted RBP24.51■■□□□ 1.51
NPAS3-201ENST00000346562 RNF25Q96BH1 459 aaPredicted RBP24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms