RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 AMACRQ9UHK6 382 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 LNPEPQ9UIQ6 1025 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 STARD13Q9Y3M8 1113 aa8.74□□□□□ -1.01
ATG4A-201ENST00000343524 A0A087WZG4 1122 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 WNT7AO00755 349 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 ASLP04424 464 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 CALM1P0DP23 149 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 CALM2P0DP24 149 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 CALM3P0DP25 149 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 EIF4BP23588 611 aaKnown RBP8.73□□□□□ -1.01
ATG4A-201ENST00000343524 PTPN4P29074 926 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 ADD2P35612 726 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 FLT3P36888 993 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 RGS2P41220 211 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 NPEPPSP55786 919 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 CBX3Q13185 183 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 MPP3Q13368 585 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 ZNF174Q15697 407 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 LMBR1LQ6UX01 489 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 MAEAQ7L5Y9 396 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 PHLDB2Q86SQ0 1253 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 FANCBQ8NB91 859 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 FLAD1Q8NFF5 587 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 UCMAQ8WVF2 138 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 SCG3Q8WXD2 468 aaKnown RBP8.73□□□□□ -1.01
ATG4A-201ENST00000343524 TSG101Q99816 390 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 CCSER1Q9C0I3 900 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 ZCWPW1Q9H0M4 648 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 SAR1AQ9NR31 198 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 NKIRAS1Q9NYS0 192 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 DDX25Q9UHL0 483 aaKnown RBP8.73□□□□□ -1.01
ATG4A-201ENST00000343524 CNTNAP1P78357 1384 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 UMODL1Q5DID0 1318 aa8.73□□□□□ -1.01
ATG4A-201ENST00000343524 A8MXQ7 604 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 PODXLO00592 558 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ZWINTO95229 277 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ITGA2BP08514 1039 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ITGA6P23229 1130 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ACADVLP49748 655 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 INHBCP55103 352 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TIMM10P62072 90 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 IL9RQ01113 521 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 PDE4DQ08499 809 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 PDIA6Q15084 440 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ADRM1Q16186 407 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ASIC2Q16515 512 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 AKNAD1Q5T1N1 836 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 PRPF38BQ5VTL8 546 aaKnown RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 DUPD1Q68J44 220 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ANKRD40Q6AI12 368 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 CC2D2BQ6DHV5 1058 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 MFSD6Q6ZSS7 791 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TRMT10CQ7L0Y3 403 aaKnown RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 PEX26Q7Z412 305 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 DAAM2Q86T65 1068 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 VPS36Q86VN1 386 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ZNF654Q8IZM8 581 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 XAGE3Q8WTP9 111 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TNFRSF25Q93038 417 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TMEM60Q9H2L4 133 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 SYNCQ9H7C4 482 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TMEM165Q9HC07 324 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TIMMDC1Q9NPL8 285 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ZDHHC18Q9NUE0 388 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TUBA8Q9NY65 449 aaPredicted RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 SSX2IPQ9Y2D8 614 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TMED5Q9Y3A6 229 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ACTL7BQ9Y614 415 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 PCDH11XQ9BZA7 1347 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TMEM120BA0PK00 339 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 RAD21O60216 631 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ZNF189O75820 626 aaPredicted RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 UPP2O95045 317 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 LYNP07948 512 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 PABPC4LP0CB38 370 aaKnown RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TROVE2P10155 538 aaKnown RBP eCLIP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 BCRP11274 1271 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 RARGP13631 454 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 RASA1P20936 1047 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 CALML3P27482 149 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 UBA7P41226 1012 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 CLCN2P51788 898 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 RNASE9P60153 205 aaKnown RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 RPL26P61254 145 aaKnown RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 CDR2Q01850 454 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 KLHL30Q0D2K2 578 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 AUHQ13825 339 aaKnown RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 HS2ST1Q7LGA3 356 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ZNF398Q8TD17 642 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 NAT14Q8WUY8 206 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ERP27Q96DN0 273 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 CLMNQ96JQ2 1002 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ZNF512BQ96KM6 892 aaPredicted RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 AK8Q96MA6 479 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 TBC1D10AQ9BXI6 508 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 AP1M1Q9BXS5 423 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 NAPBQ9H115 298 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 ASCC2Q9H1I8 757 aaPredicted RBP8.72□□□□□ -1.01
ATG4A-201ENST00000343524 MYLK2Q9H1R3 596 aa8.72□□□□□ -1.01
ATG4A-201ENST00000343524 DHX36Q9H2U1 1008 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms