RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 TMEM120BA0PK00 339 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 DENND3A2RUS2 1198 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 SKAP2O75563 359 aaPredicted RBP13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 CDK17Q00537 523 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 PRR5LQ6MZQ0 368 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 HIPK4Q8NE63 616 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 P3H4Q92791 437 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 TTC17Q96AE7 1141 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 SPDL1Q96EA4 605 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 CYTH2Q99418 400 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 KIFC3Q9BVG8 833 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 DDX20Q9UHI6 824 aaKnown RBP13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 H7C0C1 242 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 I3L4J1 428 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 ZBED4O75132 1171 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 SMIM24O75264 130 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 ATP5OP48047 213 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 IFI35P80217 286 aaPredicted RBP13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 TFAMQ00059 246 aaKnown RBP13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 SEMA3FQ13275 785 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 NPY5RQ15761 445 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 CDC42EP5Q6NZY7 148 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 HAUS6Q7Z4H7 955 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 PDCD7Q8N8D1 485 aaKnown RBP13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 C4orf32Q8N8J7 132 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 SLC20A1Q8WUM9 679 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 PIK3C2AO00443 1686 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 GPR75-ASB3A0A0A6YYF3 556 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 AGPSO00116 658 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 SCP2P22307 547 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 RPA1P27694 616 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 ZNF844Q08AG5 666 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 GIT2Q14161 759 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 TTLL3Q9Y4R7 772 aa13.3□□□□□ -0.28
SNRNP48-201ENST00000342415 CDC25CP30307 473 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 ITIH3Q06033 890 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 SDCCAG8Q86SQ7 713 aaPredicted RBP13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 SLC51AQ86UW1 340 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 ANKMY2Q8IV38 441 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 SGSM3Q96HU1 749 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 MAN1A1P33908 653 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 EAPPQ56P03 285 aaPredicted RBP13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 SEPT14Q6ZU15 432 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 TRPM8Q7Z2W7 1104 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 BAP1Q92560 729 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 CAVIN3Q969G5 261 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 RAVER2Q9HCJ3 691 aaKnown RBP13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 SYNJ2BP-COX16A0A087WUM0 186 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 CCT8L1PA6NM43 557 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 INHBAP08476 426 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 ELF1P32519 619 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 NPEPPSP55786 919 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 AOC3Q16853 763 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 COX16Q9P0S2 106 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 L3MBTL1Q9Y468 752 aa13.29□□□□□ -0.28
SNRNP48-201ENST00000342415 FAM187AA6NFU0 413 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 F5H423 210 aaPredicted RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 MSH4O15457 936 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 SAT1P21673 171 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 SCTRP47872 440 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 GPS1Q13098 491 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 ORC2Q13416 577 aaPredicted RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 ECM1Q16610 540 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 CEP55Q53EZ4 464 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 RINT1Q6NUQ1 792 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 LRRC55Q6ZSA7 311 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 ZBED8Q8IZ13 594 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 PYROXD1Q8WU10 500 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 MAML1Q92585 1016 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 RTFDC1Q9BY42 306 aaPredicted RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 TRIM6Q9C030 488 aaPredicted RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 PCSK1NQ9UHG2 260 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 G3BP2Q9UN86 482 aaKnown RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 RIMBP3CA6NJZ7 1639 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 RIMBP3BA6NNM3 1639 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 RIMBP3Q9UFD9 1639 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 FLT3P36888 993 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 IZUMO3Q5VZ72 239 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 PPP1R18Q6NYC8 613 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 ACSF2Q96CM8 615 aaPredicted RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 LRRC37BQ96QE4 947 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 POP1Q99575 1024 aaKnown RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 TMEM117Q9H0C3 514 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 GPRC5CQ9NQ84 441 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 FBXO28Q9NVF7 368 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 MYO3BQ8WXR4 1341 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 NOP56O00567 594 aaKnown RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 DDX3XO00571 662 aaKnown RBP eCLIP13.28□□□□□ -0.285e-12■■■■□ 22.5
SNRNP48-201ENST00000342415 STAM2O75886 525 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 POLE2P56282 527 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 MTMR1Q13613 665 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 RASIP1Q5U651 963 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 PLA2G4FQ68DD2 849 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 DNAJC24Q6P3W2 148 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 LRIG3Q6UXM1 1119 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 PTF1AQ7RTS3 328 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 RFX6Q8HWS3 928 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 ZNF341Q9BYN7 854 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 SUCLA2Q9P2R7 463 aaPredicted RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 KITP10721 976 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms