RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 CNBD1Q8NA66 436 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 OR8K1Q8NGG5 319 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 MIEF2Q96C03 454 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 TACC3Q9Y6A5 838 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 VWA3AA6NCI4 1184 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 PRAMEF18Q5VWM3 479 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 DHX32Q7L7V1 743 aaKnown RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 DDX18Q9NVP1 670 aaKnown RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 FANCMQ8IYD8 2048 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 GSTTP1A0A1W2PQM5 241 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 MYL4P12829 197 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 TRIM42Q8IWZ5 723 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 SCFD1Q8WVM8 642 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 PCDHGA3Q9Y5H0 932 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 HNRNPCL2B2RXH8 293 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 RASA4BC9J798 803 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 RASA4O43374 803 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 IFNB1P01574 187 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 PRAM1Q96QH2 718 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 SLIT1O75093 1534 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 USF3Q68DE3 2245 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 MAGEA1P43355 309 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 BCAMP50895 628 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 DAB2P98082 770 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CETN1Q12798 172 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 TSC22D1Q15714 1073 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ZSWIM2Q8NEG5 633 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 RIN3Q8TB24 985 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 GGPS1O95749 300 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF16P17020 682 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 FECHP22830 423 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 KCNJ1P48048 391 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 TEKT4Q8WW24 435 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 SLC27A2O14975 620 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CDK18Q07002 472 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 AGBL2Q5U5Z8 902 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CAVIN3Q969G5 261 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 KLC4Q9NSK0 619 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 LOC100653049A0A140TA62 436 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 KRT34O76011 436 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 GRIN1Q05586 938 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 COX10Q12887 443 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 GRAMD1BQ3KR37 738 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 SLC7A5P1Q8MH63 180 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 IGSF22Q8N9C0 903 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 RASSF5Q8WWW0 418 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CDCA5Q96FF9 252 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CYLDQ9NQC7 956 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ECHDC1Q9NTX5 307 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 GREB1Q4ZG55 1949 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CBFA2T3O75081 653 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ACTN1P12814 892 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 MXI1P50539 228 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ANKRD2Q9GZV1 360 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CHPF2Q9P2E5 772 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 WDR46O15213 610 aaKnown RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 TCP10Q12799 353 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 PREPLQ4J6C6 727 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ROPN1BQ9BZX4 212 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ROPN1Q9HAT0 212 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 FAM205CA6NFA0 338 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 PPP6R2O75170 966 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 VEGFAP15692 232 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 IFI35P80217 286 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 FKBP9P1Q75LS8 142 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CSGALNACT2Q8N6G5 542 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 SH3GL1Q99961 368 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 AZI2Q9H6S1 392 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 GAS8O95995 478 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 PAEPP09466 180 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CCR3P51677 355 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 RIPOR1Q6ZS17 1223 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 MOCOSQ96EN8 888 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CARD9Q9H257 536 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 KDM1AO60341 852 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 SCG2P13521 617 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 GSTA5Q7RTV2 222 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 DACT3Q96B18 629 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 SRPK1Q96SB4 655 aaKnown RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 AATFQ9NY61 560 aaKnown RBP eCLIP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ZMYM6O95789 1325 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CHL1O00533 1208 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 SYDE1Q6ZW31 735 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 DBNDD1Q9H9R9 158 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 STK17AQ9UEE5 414 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 BTAF1O14981 1849 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 NCF2P19878 526 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 KIF11P52732 1056 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ENPEPQ07075 957 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 TSTA3Q13630 321 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-201ENST00000341594 PARP6Q2NL67 630 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 KAT14Q9H8E8 782 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ARHGAP26Q9UNA1 814 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 CPEP16870 476 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 LIFRP42702 1097 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 ECE1P42892 770 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 DOK7Q18PE1 504 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 COPS6Q7L5N1 327 aa3.78□□□□□ -1.8
SYNE1-201ENST00000341594 NDUFAB1O14561 156 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms