RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LMNB1P20700 586 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 TNNC1P63316 161 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 ITIH3Q06033 890 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 CETN1Q12798 172 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 EPC2Q52LR7 807 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 INTS8Q75QN2 995 aaKnown RBP11.2□□□□□ -0.62
LIMA1-201ENST00000341247 LMO3Q8TAP4 145 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 BTBD6Q96KE9 485 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 STRA6Q9BX79 667 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 TMEM117Q9H0C3 514 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 DPH5Q9H2P9 285 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 KMT5AQ9NQR1 393 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 AMFRQ9UKV5 643 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 ANKRD65E5RJM6 399 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 SART1O43290 800 aaKnown RBP11.2□□□□□ -0.62
LIMA1-201ENST00000341247 ZNF862O60290 1169 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 HSF2BPO75031 334 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 FGGP02679 453 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 FTLP02792 175 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-201ENST00000341247 ADSSP30520 456 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 MKRN4PQ13434 485 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-201ENST00000341247 C1orf220Q5T0J3 134 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 NT5DC3Q86UY8 548 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 CPNE8Q86YQ8 564 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 OLIG1Q8TAK6 271 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 DHX38Q92620 1227 aaKnown RBP11.2□□□□□ -0.62
LIMA1-201ENST00000341247 ZIM3Q96PE6 472 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 FBXL5Q9UKA1 691 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 COG5Q9UP83 839 aa11.2□□□□□ -0.62
LIMA1-201ENST00000341247 PGRMC1O00264 195 aaKnown RBP11.19□□□□□ -0.62
LIMA1-201ENST00000341247 MUTP22033 750 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 AARSP49588 968 aaKnown RBP eCLIP11.19□□□□□ -0.62
LIMA1-201ENST00000341247 ERVK-9P63128 1117 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 DMP1Q13316 513 aaPredicted RBP11.19□□□□□ -0.62
LIMA1-201ENST00000341247 SNRNP35Q16560 246 aaKnown RBP11.19□□□□□ -0.62
LIMA1-201ENST00000341247 MTERF2Q49AM1 385 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 KCTD17Q8N5Z5 321 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 ZNF280CQ8ND82 737 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 SLC30A5Q8TAD4 765 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 TRPM4Q8TD43 1214 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 POMGNT1Q8WZA1 660 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 SEMA4DQ92854 862 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 AGPAT1Q99943 283 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 R3HDMLQ9H3Y0 253 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 UBE4BO95155 1302 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 PTPRAP18433 802 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 CNGA1P29973 690 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 ATP1A2P50993 1020 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 FSTL1Q12841 308 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 SLC47A2Q86VL8 602 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 SGIP1Q9BQI5 828 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 RNF14Q9UBS8 474 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 DBR1Q9UK59 544 aaKnown RBP11.19□□□□□ -0.62
LIMA1-201ENST00000341247 HNRNPDLO14979 420 aaKnown RBP11.19□□□□□ -0.62
LIMA1-201ENST00000341247 SSTR3P32745 418 aaPredicted RBP11.19□□□□□ -0.62
LIMA1-201ENST00000341247 SMTNP53814 917 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 PAK2Q13177 524 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 TMEM132BQ14DG7 1078 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 MAATS1Q7Z4T9 603 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 OR2W6PQ8NHA6 318 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 FAM76AQ8TAV0 307 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 LMBR1Q8WVP7 490 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 RFFLQ8WZ73 363 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 TBX20Q9UMR3 447 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 PCDHA10Q9Y5I2 948 aa11.19□□□□□ -0.62
LIMA1-201ENST00000341247 TTI1O43156 1089 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 CCND2P30279 289 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 ACTN2P35609 894 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 MESDQ14696 234 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 R3HDM1Q15032 1099 aaKnown RBP11.18□□□□□ -0.62
LIMA1-201ENST00000341247 NFIL3Q16649 462 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 C2CD6Q53TS8 623 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 CFAP58Q5T655 872 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 EMBQ6PCB8 327 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 EEPD1Q7L9B9 569 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 C4orf19Q8IY42 314 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 SCYL3Q8IZE3 742 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 TAS1R2Q8TE23 839 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.18□□□□□ -0.62
LIMA1-201ENST00000341247 TRIM51Q9BSJ1 452 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 MOV10L1Q9BXT6 1211 aaKnown RBP11.18□□□□□ -0.62
LIMA1-201ENST00000341247 GDF3Q9NR23 364 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 RGS20O76081 388 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 HARSP12081 509 aaKnown RBP11.18□□□□□ -0.62
LIMA1-201ENST00000341247 MARCKSL1P49006 195 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 ZNF280AP59817 542 aaPredicted RBP11.18□□□□□ -0.62
LIMA1-201ENST00000341247 GTF2BQ00403 316 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 KRT76Q01546 638 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 SEPT14Q6ZU15 432 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 CCDC60Q8IWA6 550 aaPredicted RBP11.18□□□□□ -0.62
LIMA1-201ENST00000341247 TMEM161BQ8NDZ6 487 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 PBKQ96KB5 322 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 PCDHB18PQ96TA0 734 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 FAM213AQ9BRX8 229 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 NENFQ9UMX5 172 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 ADGRA3Q8IWK6 1321 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 SSC5DA1L4H1 1573 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 DAPK3O43293 454 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 KRT5P13647 590 aa11.18□□□□□ -0.62
LIMA1-201ENST00000341247 JAK3P52333 1124 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms