RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CNTNAP2Q9UHC6 1331 aa17.52■□□□□ 0.39
CCDC28A-201ENST00000332797 GOLGA6L4A6NEF3 574 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 K7ERI5 159 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 FAM189BP81408 668 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 HTRA4P83105 476 aaPredicted RBP17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 PRPF4BQ13523 1007 aaKnown RBP17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 FAM187BQ17R55 369 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 ECHDC2Q86YB7 292 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 CEP57L1Q8IYX8 460 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 SLC28A3Q9HAS3 691 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 MAGEF1Q9HAY2 307 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 KBTBD4Q9NVX7 518 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 TMEM161AQ9NX61 479 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 ARHGAP28Q9P2N2 729 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 HPSEQ9Y251 543 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 USP20Q9Y2K6 914 aa17.51■□□□□ 0.39
CCDC28A-201ENST00000332797 A0A0U1RQF3 1178 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 ACKR2O00590 384 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 EDN1P05305 212 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 IDEP14735 1019 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 GATMP50440 423 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 RAB27AP51159 221 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 NDUFA8P51970 172 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 ZNF697Q5TEC3 545 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 PPP2R2DQ66LE6 453 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 CDR2LQ86X02 465 aaPredicted RBP17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 CRIPAKQ8N1N5 446 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 DNAJC19Q96DA6 116 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 CCDC51Q96ER9 411 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 LRRC27Q9C0I9 530 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 GOLPH3LQ9H4A5 285 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 TMEM134Q9H6X4 195 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 ELAC1Q9H777 363 aaKnown RBP17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 FAM105AQ9NUU6 356 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 SERTAD1Q9UHV2 236 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 KCNG1Q9UIX4 513 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 CHD9Q3L8U1 2897 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 TTLL13PA6NNM8 815 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 K7ENM7 598 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 DGKIO75912 1065 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 ARHGEF15O94989 841 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 SKIP12755 728 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 SYKP43405 635 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 NCKAP1LP55160 1127 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 AMPD3Q01432 767 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 CSPP1Q1MSJ5 1256 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 LONRF3Q496Y0 759 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 UBXN11Q5T124 520 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 TAS1R3Q7RTX0 852 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 SFR1Q86XK3 245 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 TMEM161BQ8NDZ6 487 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 NTPCRQ9BSD7 190 aaKnown RBP17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 TRAIPQ9BWF2 469 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 EIF2AQ9BY44 585 aaKnown RBP17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 PCDHB2Q9Y5E7 798 aa17.5■□□□□ 0.39
CCDC28A-201ENST00000332797 COL4A6Q14031 1691 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 TMEM265A0A087WTH1 108 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 FAM237AA0A1B0GTK4 181 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 H0YCG3 227 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 ACTN4O43707 911 aaKnown RBP17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 TRAK2O60296 914 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 NPTXRO95502 500 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 SLFN14P0C7P3 912 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 MAPTP10636 758 aaKnown RBP17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 FGFR1P11362 822 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 ATF7P17544 494 aaPredicted RBP17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 AFMP43652 599 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 PAN2Q504Q3 1202 aaKnown RBP17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 GPR153Q6NV75 609 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 SLC27A1Q6PCB7 646 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 ZNF598Q86UK7 904 aaKnown RBP17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 FAM178BQ8IXR5 827 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 SP7Q8TDD2 431 aaPredicted RBP17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 LPPQ93052 612 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 FAM161BQ96MY7 647 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 TRIM9Q9C026 710 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 TTYH1Q9H313 450 aaPredicted RBP17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 PDZD7Q9H5P4 517 aa17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 RC3H2Q9HBD1 1191 aaKnown RBP17.49■□□□□ 0.39
CCDC28A-201ENST00000332797 A0A1B0GUA9 196 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 N4BP3O15049 544 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 EOMESO95936 686 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 GAP43P17677 238 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 ASIC1P78348 528 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 TAP1Q03518 808 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 STRN3Q13033 797 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 BTG3Q14201 252 aaPredicted RBP17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 NT5DC1Q5TFE4 455 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 Q7L0L9 218 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 HAUS6Q7Z4H7 955 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 GRAMD1CQ8IYS0 662 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 ZNF689Q96CS4 500 aaPredicted RBP17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 MRPL4Q9BYD3 311 aaKnown RBP17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 TRIM6Q9C030 488 aaPredicted RBP17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 ZNF576Q9H609 170 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 PANK4Q9NVE7 773 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 USP25Q9UHP3 1055 aa17.48■□□□□ 0.39
CCDC28A-201ENST00000332797 LINC01553A4QN01 128 aa17.47■□□□□ 0.39
CCDC28A-201ENST00000332797 TBKBP1A7MCY6 615 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms