RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 CTNNBL1Q8WYA6 563 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 RFFLQ8WZ73 363 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 TIPINQ9BVW5 301 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 TMEM117Q9H0C3 514 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 THAP2Q9H0W7 228 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 ZNF112Q9UJU3 913 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 PNMA2Q9UL42 364 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 TBX20Q9UMR3 447 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 NOC2LQ9Y3T9 749 aaKnown RBP16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 NCANO14594 1321 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 FAM153BP0C7A2 387 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 RFX1P22670 979 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 DSG3P32926 999 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 MXI1P50539 228 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 TNNC1P63316 161 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 DMP1Q13316 513 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 SNRNP35Q16560 246 aaKnown RBP16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 FAM153CQ494X1 144 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 ZNF746Q6NUN9 644 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 PROCA1Q8NCQ7 364 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 ACTRT1Q8TDG2 376 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 CASKIN2Q8WXE0 1202 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 CCDC127Q96BQ5 260 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 GPRASP2Q96D09 838 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 CEP170P1Q96L14 293 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 SUCLA2Q9P2R7 463 aaPredicted RBP16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 FAM153AQ9UHL3 310 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 PHIPQ8WWQ0 1821 aa16.1■□□□□ 0.17
CLCNKA-201ENST00000331433 DENND3A2RUS2 1198 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 KCNA2P16389 499 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 USP8P40818 1118 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 SMTNP53814 917 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 MAP2K1Q02750 393 aaPredicted RBP16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 SYCE1Q8N0S2 351 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 TRPM4Q8TD43 1214 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 POP1Q99575 1024 aaKnown RBP16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 AGPAT1Q99943 283 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 PGRMC1O00264 195 aaKnown RBP16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 CNGA1P29973 690 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 SWSAP1Q6NVH7 229 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 NSUN6Q8TEA1 469 aaKnown RBP16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 SCFD2Q8WU76 684 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 CAVIN3Q969G5 261 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 HES6Q96HZ4 224 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 IWS1Q96ST2 819 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 KMT5AQ9NQR1 393 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 PFASO15067 1338 aa16.09■□□□□ 0.17
CLCNKA-201ENST00000331433 CCDC66A2RUB6 948 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 P4HA2O15460 535 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 CAPN2P17655 700 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 GUCY2FP51841 1108 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 PRKG1Q13976 671 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 XRRA1Q6P2D8 792 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 FMNL3Q8IVF7 1028 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 MAP4K3Q8IVH8 894 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 ACP6Q9NPH0 428 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 A1CFQ9NQ94 594 aaKnown RBP16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 AMFRQ9UKV5 643 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 COG5Q9UP83 839 aa16.08■□□□□ 0.17
CLCNKA-201ENST00000331433 ITGA4P13612 1032 aa16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 HNRNPH2P55795 449 aaKnown RBP16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 PAK2Q13177 524 aa16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 AFAP1L1Q8TED9 768 aa16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 SEMA4DQ92854 862 aa16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 ELMO3Q96BJ8 720 aa16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 DDX47Q9H0S4 455 aaKnown RBP16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 TOPORSQ9NS56 1045 aaPredicted RBP16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 CYP39A1Q9NYL5 469 aa16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 ADAMTS5Q9UNA0 930 aa16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 DAAM1Q9Y4D1 1078 aa16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 ADGRA3Q8IWK6 1321 aa16.08■□□□□ 0.16
CLCNKA-201ENST00000331433 STBD1O95210 358 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 PPATQ06203 517 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 SLC39A4Q6P5W5 647 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 CCDC60Q8IWA6 550 aaPredicted RBP16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 RPUSD2Q8IZ73 545 aaKnown RBP16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 PPM1KQ8N3J5 372 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 RDM1Q8NG50 284 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 C12orf42Q96LP6 360 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 SENP7Q9BQF6 1050 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 MTFR1LQ9H019 292 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 JPH1Q9HDC5 661 aaPredicted RBP16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 EXOC7Q9UPT5 735 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 ANKRD62A6NC57 917 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 KRIT1O00522 736 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 MAPK13O15264 365 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 SGPL1O95470 568 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 SNRPFP62306 86 aaKnown RBP16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 ERVK-9P63128 1117 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 TAF3Q5VWG9 929 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 OTUD6AQ7L8S5 288 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 ATP6V0A1Q93050 837 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 KLRG1Q96E93 195 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 KREMEN1Q96MU8 473 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 TEX13BQ9BXU2 312 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 GGA3Q9NZ52 723 aa16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 CHORDC1Q9UHD1 332 aaPredicted RBP16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 SEPT9Q9UHD8 586 aaPredicted RBP16.07■□□□□ 0.16
CLCNKA-201ENST00000331433 SART1O43290 800 aaKnown RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms