RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 NOLC1Q14978 699 aaKnown RBP eCLIP10.98□□□□□ -0.65
HMGB3-201ENST00000325307 KRT31Q15323 416 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 NBPF20Q3BBV1 942 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 MARCH8Q5T0T0 291 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 HVCN1Q96D96 273 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 CTAGE1Q96RT6 745 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.98□□□□□ -0.652e-6■■■■■ 36
HMGB3-201ENST00000325307 VPS16Q9H269 839 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 AGPAT3Q9NRZ7 376 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 TISP43B9A030 160 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 INO80B-WBP1J3KQ70 363 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 N4BP3O15049 544 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 EEF1GP26641 437 aaKnown RBP10.98□□□□□ -0.65
HMGB3-201ENST00000325307 ABCD1P33897 745 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 MATR3P43243 847 aaKnown RBP eCLIP10.98□□□□□ -0.65
HMGB3-201ENST00000325307 ZNF200P98182 395 aaPredicted RBP10.98□□□□□ -0.65
HMGB3-201ENST00000325307 LRRC55Q6ZSA7 311 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 NLRP7Q8WX94 980 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 INO80BQ9C086 356 aaPredicted RBP10.98□□□□□ -0.65
HMGB3-201ENST00000325307 UNC93B1Q9H1C4 597 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 PCIF1Q9H4Z3 704 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 KAT6AQ92794 2004 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 ASAP2O43150 1006 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 LIG4P49917 911 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 EFNA5P52803 228 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 TMEM62Q0P6H9 643 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 ARMCX5Q6P1M9 558 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 IRF2BP1Q8IU81 584 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 MAP4K3Q8IVH8 894 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 CEP63Q96MT8 703 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 USP20Q9Y2K6 914 aa10.98□□□□□ -0.65
HMGB3-201ENST00000325307 KLHDC9Q8NEP7 349 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 PLCD4Q9BRC7 762 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 RNF208Q9H0X6 261 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 C2orf40Q9H1Z8 148 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 TREHO43280 583 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 EXOC3O60645 756 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 EPB41P11171 864 aaKnown RBP10.97□□□□□ -0.65
HMGB3-201ENST00000325307 PHKA2P46019 1235 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 SLC20A2Q08357 652 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 MAPK6Q16659 721 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 FOXR2Q6PJQ5 311 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 KIAA0319LQ8IZA0 1049 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 MYRIPQ8NFW9 859 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 TUBGCP2Q9BSJ2 902 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 FRMD4BQ9Y2L6 1034 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 A0A087WZ62 844 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 CST5P28325 142 aaPredicted RBP10.97□□□□□ -0.65
HMGB3-201ENST00000325307 LBX1P52954 281 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 COPB1P53618 953 aaKnown RBP10.97□□□□□ -0.65
HMGB3-201ENST00000325307 NLRP11P59045 1033 aaKnown RBP10.97□□□□□ -0.65
HMGB3-201ENST00000325307 FILIP1Q7Z7B0 1213 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 RDH13Q8NBN7 331 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 ARRDC4Q8NCT1 418 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 POMGNT1Q8WZA1 660 aa10.97□□□□□ -0.65
HMGB3-201ENST00000325307 FDXACB1Q9BRP7 624 aaPredicted RBP10.97□□□□□ -0.65
HMGB3-201ENST00000325307 NOC4LQ9BVI4 516 aaKnown RBP10.97□□□□□ -0.65
HMGB3-201ENST00000325307 LIMA1Q9UHB6 759 aaKnown RBP10.97□□□□□ -0.65
HMGB3-201ENST00000325307 GOLGA6L6A8MZA4 724 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 CSDE1O75534 798 aaKnown RBP10.96□□□□□ -0.65
HMGB3-201ENST00000325307 GNA14O95837 355 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 ACLYP53396 1101 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 MTFR1Q15390 333 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 PTPN21Q16825 1174 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 KIZQ2M2Z5 673 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 LHX8Q68G74 356 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 RUFY4Q6ZNE9 571 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 TAS1R3Q7RTX0 852 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 DNAJB3Q8WWF6 145 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 GLT1D1Q96MS3 346 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 DEFB118Q96PH6 123 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 CBWD1Q9BRT8 395 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 ANKFY1Q9P2R3 1169 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 EVPLQ92817 2033 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 PHLPP2Q6ZVD8 1323 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 KBTBD13C9JR72 458 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 ANKRD63C9JTQ0 380 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 PRKCBP05771 671 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 HSPA8P11142 646 aaKnown RBP10.96□□□□□ -0.65
HMGB3-201ENST00000325307 SCP2P22307 547 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 NKX3-2P78367 333 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 HIC1Q14526 733 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 CTU1Q7Z7A3 348 aaKnown RBP10.96□□□□□ -0.65
HMGB3-201ENST00000325307 LRRC8AQ8IWT6 810 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 ZNF710Q8N1W2 664 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 TCHPQ9BT92 498 aa10.96□□□□□ -0.65
HMGB3-201ENST00000325307 TARS2Q9BW92 718 aaKnown RBP10.96□□□□□ -0.65
HMGB3-201ENST00000325307 MBLAC1A4D2B0 266 aaPredicted RBP10.96□□□□□ -0.66
HMGB3-201ENST00000325307 CASP4P49662 377 aa10.96□□□□□ -0.66
HMGB3-201ENST00000325307 TCERG1LQ5VWI1 586 aa10.96□□□□□ -0.66
HMGB3-201ENST00000325307 LINC01465Q8N7H1 131 aa10.96□□□□□ -0.66
HMGB3-201ENST00000325307 TMEM134Q9H6X4 195 aa10.96□□□□□ -0.66
HMGB3-201ENST00000325307 CGNQ9P2M7 1197 aaKnown RBP10.96□□□□□ -0.66
HMGB3-201ENST00000325307 ARMCX3Q9UH62 379 aaPredicted RBP10.96□□□□□ -0.66
HMGB3-201ENST00000325307 NOD1Q9Y239 953 aa10.96□□□□□ -0.66
HMGB3-201ENST00000325307 SMIM35A0A1B0GVV1 85 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 GOLGA8IPA6NC78 632 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 GOLGA8JA6NMD2 632 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 CABYRO75952 493 aa10.95□□□□□ -0.66
HMGB3-201ENST00000325307 AKAP3O75969 853 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms