RNA–Protein interactions for RNA: ENST00000323144.11

TPM3-204, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,088 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-204ENST00000323144 EPCAMP16422 314 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 KRT17Q04695 432 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 RNASELQ05823 741 aaKnown RBP13.77□□□□□ -0.21
TPM3-204ENST00000323144 KANK3Q6NY19 840 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 TMEM184AQ6ZMB5 413 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 SRGAP1Q7Z6B7 1085 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 CCDC83Q8IWF9 413 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 SMG8Q8ND04 991 aaKnown RBP13.77□□□□□ -0.21
TPM3-204ENST00000323144 IGSF21Q96ID5 467 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 INO80BQ9C086 356 aaPredicted RBP13.77□□□□□ -0.21
TPM3-204ENST00000323144 POMKQ9H5K3 350 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 TTC12Q9H892 705 aaPredicted RBP13.77□□□□□ -0.21
TPM3-204ENST00000323144 RSAD1Q9HA92 442 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 MARCH5Q9NX47 278 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 HES2Q9Y543 173 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 PPME1Q9Y570 386 aa13.77□□□□□ -0.21
TPM3-204ENST00000323144 VWA8A3KMH1 1905 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 F8W810 466 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 B4GALT5O43286 388 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 GAS2O43903 313 aaKnown RBP13.76□□□□□ -0.21
TPM3-204ENST00000323144 ZNF623O75123 536 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 ERLIN2O94905 339 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 SLITRK3O94933 977 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 SSBP05455 408 aaKnown RBP eCLIP13.76□□□□□ -0.21
TPM3-204ENST00000323144 GALTP07902 379 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 MLH1P40692 756 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 TXKP42681 527 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 ALDH7A1P49419 539 aaKnown RBP13.76□□□□□ -0.21
TPM3-204ENST00000323144 RARRES1P49788 294 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 CDC42EP1Q00587 391 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 MBTD1Q05BQ5 628 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 PTPN14Q15678 1187 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 AMHR2Q16671 573 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 RARS2Q5T160 578 aaKnown RBP13.76□□□□□ -0.21
TPM3-204ENST00000323144 CDR2LQ86X02 465 aaPredicted RBP13.76□□□□□ -0.21
TPM3-204ENST00000323144 C12orf76Q8N812 135 aaPredicted RBP13.76□□□□□ -0.21
TPM3-204ENST00000323144 MRPL43Q8N983 215 aaKnown RBP13.76□□□□□ -0.21
TPM3-204ENST00000323144 URGCPQ8TCY9 931 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 PIGOQ8TEQ8 1089 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 TCP11Q8WWU5 503 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 CASP10Q92851 521 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 APOL6Q9BWW8 343 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 POLR3FQ9H1D9 316 aaPredicted RBP13.76□□□□□ -0.21
TPM3-204ENST00000323144 NXF3Q9H4D5 531 aaKnown RBP13.76□□□□□ -0.21
TPM3-204ENST00000323144 GPRC5CQ9NQ84 441 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 TSHZ2Q9NRE2 1034 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 IPPQ9Y573 584 aa13.76□□□□□ -0.21
TPM3-204ENST00000323144 PDCD11Q14690 1871 aaKnown RBP13.76□□□□□ -0.21
TPM3-204ENST00000323144 CNTNAP2Q9UHC6 1331 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 LYPLA2O95372 231 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 BAG4O95429 457 aaKnown RBP13.75□□□□□ -0.21
TPM3-204ENST00000323144 POMCP01189 267 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 CTSAP10619 480 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 SKIP12755 728 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 ATP2B1P20020 1258 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 GLRA2P23416 452 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 HOXD11P31277 338 aaPredicted RBP13.75□□□□□ -0.21
TPM3-204ENST00000323144 MCM7P33993 719 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 PTENP60484 403 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 TRIM29Q14134 588 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 POTEGQ6S5H5 508 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 EDAQ92838 391 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 ZFP42Q96MM3 310 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 CCDC43Q96MW1 224 aaKnown RBP13.75□□□□□ -0.21
TPM3-204ENST00000323144 MTMR9Q96QG7 549 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 HSD17B14Q9BPX1 270 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 RNF39Q9H2S5 420 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 SMOC2Q9H3U7 446 aa13.75□□□□□ -0.21
TPM3-204ENST00000323144 PRG3Q9Y2Y8 225 aaPredicted RBP13.75□□□□□ -0.21
TPM3-204ENST00000323144 TMEM221A6NGB7 291 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 C2CD4DB7Z1M9 353 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 INO80B-WBP1J3KQ70 363 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 M0R296 226 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 MED24O75448 989 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 NCLP19338 710 aaKnown RBP13.74□□□□□ -0.21
TPM3-204ENST00000323144 SCNN1GP51170 649 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 ZXDAP98168 799 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 NBR1Q14596 966 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 PTPN21Q16825 1174 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 OTUD6AQ7L8S5 288 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 MRPL10Q7Z7H8 261 aaKnown RBP13.74□□□□□ -0.21
TPM3-204ENST00000323144 DDX53Q86TM3 631 aaKnown RBP13.74□□□□□ -0.21
TPM3-204ENST00000323144 RSPH1Q8WYR4 309 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 PGBD4Q96DM1 585 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 CACNG4Q9UBN1 327 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 PCDHA12Q9UN75 941 aa13.74□□□□□ -0.21
TPM3-204ENST00000323144 ARIH1Q9Y4X5 557 aaPredicted RBP13.74□□□□□ -0.21
TPM3-204ENST00000323144 TRIP11Q15643 1979 aa13.73□□□□□ -0.21
TPM3-204ENST00000323144 MTCL1Q9Y4B5 1905 aaKnown RBP13.73□□□□□ -0.21
TPM3-204ENST00000323144 CXCL14O95715 111 aa13.73□□□□□ -0.21
TPM3-204ENST00000323144 EDN1P05305 212 aa13.73□□□□□ -0.21
TPM3-204ENST00000323144 SPATA31C1P0DKV0 1188 aa13.73□□□□□ -0.21
TPM3-204ENST00000323144 ARF4P18085 180 aaPredicted RBP13.73□□□□□ -0.21
TPM3-204ENST00000323144 ARL2P36404 184 aa13.73□□□□□ -0.21
TPM3-204ENST00000323144 NOTUMQ6P988 496 aa13.73□□□□□ -0.21
TPM3-204ENST00000323144 TRIM67Q6ZTA4 783 aa13.73□□□□□ -0.21
TPM3-204ENST00000323144 MAEAQ7L5Y9 396 aa13.73□□□□□ -0.21
TPM3-204ENST00000323144 IFNLR1Q8IU57 520 aaPredicted RBP13.73□□□□□ -0.21
TPM3-204ENST00000323144 SLC22A17Q8WUG5 538 aa13.73□□□□□ -0.21
TPM3-204ENST00000323144 BSNDQ8WZ55 320 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms