RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 SNX12Q9UMY4 172 aa7.14□□□□□ -1.27
ZNF540-201ENST00000316433 PCDHA4Q9UN74 947 aa7.14□□□□□ -1.27
ZNF540-201ENST00000316433 TDRKHQ9Y2W6 561 aaKnown RBP7.14□□□□□ -1.27
ZNF540-201ENST00000316433 CNTNAP4Q9C0A0 1308 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 B4E1Z4 1266 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 BTBD19C9JJ37 291 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 ATP5J2-PTCD1G3V325 749 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 PTCD1O75127 700 aaKnown RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 STK10O94804 968 aaKnown RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 OXSR1O95747 527 aaPredicted RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 MSL3P1P0C860 447 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 RXRBP28702 533 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 MSLNQ13421 630 aaPredicted RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 RASGRF1Q13972 1273 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 GSTA3Q16772 222 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 EAPPQ56P03 285 aaPredicted RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 NAALADL2Q58DX5 795 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 C6orf183Q5T699 404 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 MOXD1Q6UVY6 613 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 CABP7Q86V35 215 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 TREML1Q86YW5 311 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 ENAHQ8N8S7 591 aaPredicted RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 FAM133AQ8N9E0 248 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 NELFBQ8WX92 580 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 SLC26A6Q9BXS9 759 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 NDEL1Q9GZM8 345 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 RIC8AQ9NPQ8 531 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 NOVA2Q9UNW9 492 aaKnown RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 SIK3Q9Y2K2 1263 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 SIPA1L1O43166 1804 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 PDE5AO76074 875 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 ACADVLP49748 655 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 ZNF844Q08AG5 666 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 SPIDRQ14159 915 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 R3HDM1Q15032 1099 aaKnown RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 ARHGEF6Q15052 776 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 CNGA3Q16281 694 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 NEK10Q6ZWH5 1172 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 CCDC84Q86UT8 332 aaPredicted RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 PROSER2Q86WR7 435 aaPredicted RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 LRRC34Q8IZ02 419 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 CEP63Q96MT8 703 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 NSRP1Q9H0G5 558 aaKnown RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 GBA3Q9H227 469 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 GREM2Q9H772 168 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 SH2D4AQ9H788 454 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 SEC31BQ9NQW1 1179 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 SAP30BPQ9UHR5 308 aaKnown RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 DIS3Q9Y2L1 958 aaKnown RBP7.13□□□□□ -1.27
ZNF540-201ENST00000316433 LOC285556D6RIA3 1793 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 SNED1Q8TER0 1413 aa7.13□□□□□ -1.27
ZNF540-201ENST00000316433 H0YGN5 161 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 IRS4O14654 1257 aaPredicted RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 ENPP1P22413 925 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 MARCKSP29966 332 aaPredicted RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 TUFMP49411 452 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 CDK7P50613 346 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 EMP3P54852 163 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 HADHBP55084 474 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 MAGOHP61326 146 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 OCRLQ01968 901 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 FAM209AQ5JX71 171 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 MIIPQ5JXC2 388 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 TRIM67Q6ZTA4 783 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 BRINP3Q76B58 766 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 UBE2Q1Q7Z7E8 422 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 TRMT44Q8IYL2 757 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 GUF1Q8N442 669 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 MAGOHBQ96A72 148 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 MAELQ96JY0 434 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 CCDC42Q96M95 316 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 MBOAT7Q96N66 472 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 GPR101Q96P66 508 aaPredicted RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 ZMYND12Q9H0C1 365 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 FAM114A2Q9NRY5 505 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 IL1RAPL1Q9NZN1 696 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 STOML1Q9UBI4 398 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 GGT7Q9UJ14 662 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 CCPG1Q9ULG6 757 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 TRIM33Q9UPN9 1127 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 TBC1D30Q9Y2I9 924 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 NFS1Q9Y697 457 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 TNKSO95271 1327 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 A6NJR5 290 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 TBKBP1A7MCY6 615 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 SHBGP04278 402 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 LYNP07948 512 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 GLI1P08151 1106 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 PABPC4LP0CB38 370 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 COL6A2P12110 1019 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 CCNB1P14635 433 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 LMNB1P20700 586 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 SKIV2L2P42285 1042 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 PHKA1P46020 1223 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 ARFIP2P53365 341 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 EIF2B5Q13144 721 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 DCTN2Q13561 401 aaKnown RBP7.12□□□□□ -1.27
ZNF540-201ENST00000316433 DIXDC1Q155Q3 683 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 PARP6Q2NL67 630 aa7.12□□□□□ -1.27
ZNF540-201ENST00000316433 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms