RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 PCDHA4Q9UN74 947 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 LSM1O15116 133 aaKnown RBP9.25□□□□□ -0.93
USF3-201ENST00000316407 CCDC22O60826 627 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 MARK3P27448 753 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 FAM47CQ5HY64 1035 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 ZBTB8OSQ8IWT0 167 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 IFT140Q96RY7 1462 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 CCT8L1PA6NM43 557 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 KLHL18O94889 574 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 RUNX1T1Q06455 604 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 TUBGCP3Q96CW5 907 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 MTBPQ96DY7 904 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 MAGEF1Q9HAY2 307 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 ITM2BQ9Y287 266 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 OASLQ15646 514 aaKnown RBP9.25□□□□□ -0.93
USF3-201ENST00000316407 CNBD1Q8NA66 436 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 ANKRD7Q92527 254 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 RAPGEF6Q8TEU7 1601 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 NCAPG2Q86XI2 1143 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 IFNL3Q8IZI9 196 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.25□□□□□ -0.93
USF3-201ENST00000316407 FAM118BQ9BPY3 351 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 CASS4Q9NQ75 786 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 FAM153AQ9UHL3 310 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 GCKRQ14397 625 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 AOC3Q16853 763 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 PLBD2Q8NHP8 589 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 NOL6Q9H6R4 1146 aaKnown RBP9.25□□□□□ -0.93
USF3-201ENST00000316407 TMEM165Q9HC07 324 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 PARNO95453 639 aaKnown RBP9.25□□□□□ -0.93
USF3-201ENST00000316407 AGGF1Q8N302 714 aaeCLIP9.25□□□□□ -0.93
USF3-201ENST00000316407 PIGOQ8TEQ8 1089 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 ACAP3Q96P50 834 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 TRIM39Q9HCM9 518 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 MAP3K19Q56UN5 1328 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 PLB1Q6P1J6 1458 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 XPAP23025 273 aaPredicted RBP9.25□□□□□ -0.93
USF3-201ENST00000316407 IRAK1P51617 712 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 ZC3H15Q8WU90 426 aaKnown RBP9.25□□□□□ -0.93
USF3-201ENST00000316407 AKT3Q9Y243 479 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 CCDC188H7C350 402 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 DDHD2O94830 711 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 ADORA1P30542 326 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 ARPP19P56211 112 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 ZNF790Q6PG37 636 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 NGRNQ9NPE2 291 aaKnown RBP9.25□□□□□ -0.93
USF3-201ENST00000316407 STK17AQ9UEE5 414 aa9.25□□□□□ -0.93
USF3-201ENST00000316407 POGZQ7Z3K3 1410 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 INSRP06213 1382 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 HSMCR30P0CW71 290 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 SCTRP47872 440 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 GRIN1Q05586 938 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 UBASH3BQ8TF42 649 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 ATP8A2Q9NTI2 1148 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 SOX13Q9UN79 622 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 ALAS1P13196 640 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 DHX38Q92620 1227 aaKnown RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 CCDC60Q8IWA6 550 aaPredicted RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 KDM5BQ9UGL1 1544 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 PAMP19021 973 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 RESTQ13127 1097 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 KLHL38Q2WGJ6 581 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 MFSD14BQ5SR56 506 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 DIS3LQ8TF46 1054 aaKnown RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 RBM12Q9NTZ6 932 aaKnown RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 TMEM120BA0PK00 339 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 HSPA1AP0DMV8 641 aaKnown RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 HSPA1BP0DMV9 641 aaKnown RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 ZNF394Q53GI3 561 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 RNF25Q96BH1 459 aaPredicted RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 EAF2Q96CJ1 260 aaPredicted RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 PCMTD2Q9NV79 361 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 PRG3Q9Y2Y8 225 aaPredicted RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 ADGRG1Q9Y653 693 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 ZBTB39O15060 712 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 PTPREP23469 700 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 MIER2Q8N344 545 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 BRIP1Q9BX63 1249 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 KLHL8Q9P2G9 620 aaPredicted RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 IVNS1ABPQ9Y6Y0 642 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 TMEM191CA6NGB0 347 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 FAM47DPA6NHR8 397 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 TEX33O43247 280 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 MKRN3Q13064 507 aaKnown RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 KPNB1Q14974 876 aaKnown RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 RNPC3Q96LT9 517 aaKnown RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 REXO4Q9GZR2 422 aaKnown RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 LGR6Q9HBX8 967 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 SLC25A41Q8N5S1 370 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 VPS39Q96JC1 886 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 IPPQ9Y573 584 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 SOS2Q07890 1332 aaPredicted RBP9.24□□□□□ -0.93
USF3-201ENST00000316407 PSMC6P62333 389 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 P3H1Q32P28 736 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 OR6B2Q6IFH4 312 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 KRT26Q7Z3Y9 468 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 STX19Q8N4C7 294 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 TEKT3Q9BXF9 490 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 CEP72Q9P209 647 aa9.24□□□□□ -0.93
USF3-201ENST00000316407 TRIP4Q15650 581 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms