RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 FLT1P17948 1338 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 PDS5AQ29RF7 1337 aaKnown RBP8.74□□□□□ -1.01
VPS41-202ENST00000310301 NALCNQ8IZF0 1738 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 IQANK1A0A1B0GTG1 560 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 PRKAB2O43741 272 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 SERPING1P05155 500 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 POLR2BP30876 1174 aaKnown RBP8.74□□□□□ -1.01
VPS41-202ENST00000310301 ZBED6P86452 979 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 KIF23Q02241 960 aaPredicted RBP8.74□□□□□ -1.01
VPS41-202ENST00000310301 AP3B2Q13367 1082 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 FLOT2Q14254 428 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 NBPF20Q3BBV1 942 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 ADCK5Q3MIX3 580 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 NBPF12Q5TAG4 269 aaPredicted RBP8.74□□□□□ -1.01
VPS41-202ENST00000310301 NEK8Q86SG6 692 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 FAM178BQ8IXR5 827 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 DEPDC1BQ8WUY9 529 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 GJA10Q969M2 543 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 TTC17Q96AE7 1141 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 TTC1Q99614 292 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 MIS12Q9H081 205 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 LSG1Q9H089 658 aaKnown RBP8.74□□□□□ -1.01
VPS41-202ENST00000310301 ING2Q9H160 280 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 ETNK1Q9HBU6 452 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 RWDD2AQ9UIY3 292 aa8.74□□□□□ -1.01
VPS41-202ENST00000310301 A6NJR5 290 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 FAM196BA6NMK8 535 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 STXBP3O00186 592 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 CAPN9O14815 690 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 SUPT3HO75486 399 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 AFPP02771 609 aaKnown RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 HSPA8P11142 646 aaKnown RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 LIG4P49917 911 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 DYNLT1P63172 113 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 MRPS15P82914 257 aaKnown RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 ARMCX5Q6P1M9 558 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 GPKOWQ92917 476 aaPredicted RBP eCLIP8.73□□□□□ -1.015e-7■■■■■ 43.5
VPS41-202ENST00000310301 FAM161BQ96MY7 647 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 MED10Q9BTT4 135 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 MXD3Q9BW11 206 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 NDE1Q9NXR1 346 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 TLK1Q9UKI8 766 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 SNX5Q9Y5X3 404 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 PXDNLA1KZ92 1463 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 UNCXA6NJT0 531 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 PFDN6O15212 129 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 KRT1P04264 644 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 ZBTB48P10074 688 aaPredicted RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 CPT1AP50416 773 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 BACE1P56817 501 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 PTK2Q05397 1052 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 SPOPLQ6IQ16 392 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 OR6J1Q8NGC5 347 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 SLC4A9Q96Q91 983 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 LRRC37BQ96QE4 947 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 RGS17Q9UGC6 210 aaPredicted RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 MAGED2Q9UNF1 606 aaPredicted RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 ANGPTL3Q9Y5C1 460 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 KIF20BQ96Q89 1820 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 HAUS5O94927 633 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 ATP1A3P13637 1013 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 GFAPP14136 432 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 CYP2C19P33261 490 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 PIK3CAP42336 1068 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 C10orf76Q5T2E6 689 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 ANO5Q75V66 913 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 PCGF5Q86SE9 256 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 RAPGEF5Q92565 580 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 ATP6V1E2Q96A05 226 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 ZNF577Q9BSK1 485 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 DDX25Q9UHL0 483 aaKnown RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 CPA4Q9UI42 421 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 ZNF229Q9UJW7 825 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 TRAF3IP3Q9Y228 551 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 TSC22D4Q9Y3Q8 395 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 COL4A3BPQ9Y5P4 624 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 H3BRJ5 948 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 MFAP3LO75121 409 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 GFPT2O94808 682 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 TMPRSS15P98073 1019 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 EPM2AIP1Q7L775 607 aaPredicted RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 TRIM59Q8IWR1 403 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 STAMBPL1Q96FJ0 436 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 MAGEF1Q9HAY2 307 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 TLR7Q9NYK1 1049 aaKnown RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 GNRH1P01148 92 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 EIF2AK2P19525 551 aaKnown RBP8.73□□□□□ -1.01
VPS41-202ENST00000310301 ARHGDIAP52565 204 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 CUL3Q13618 768 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 ALX1Q15699 326 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 RFX8Q6ZV50 586 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.73□□□□□ -1.01
VPS41-202ENST00000310301 IL17RAQ96F46 866 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 MLXIPLQ9NP71 852 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 RFX7Q2KHR2 1363 aa8.73□□□□□ -1.01
VPS41-202ENST00000310301 SYNJ2BP-COX16A0A087WUM0 186 aa8.72□□□□□ -1.01
VPS41-202ENST00000310301 USP27XA6NNY8 438 aa8.72□□□□□ -1.01
VPS41-202ENST00000310301 HNRNPCL2B2RXH8 293 aa8.72□□□□□ -1.01
VPS41-202ENST00000310301 HNRNPCL1O60812 293 aaKnown RBP8.72□□□□□ -1.01
VPS41-202ENST00000310301 KITP10721 976 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms