RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 IFIT1P09914 478 aaKnown RBP5.3□□□□□ -1.56
CD44-202ENST00000278385 TMEM253P0C7T8 217 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 IFNGR1P15260 489 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 PNLIPP16233 465 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 PRKCAP17252 672 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 HOXC12P31275 282 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 UBA7P41226 1012 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 RAD52P43351 418 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 RECQLP46063 649 aaPredicted RBP5.3□□□□□ -1.56
CD44-202ENST00000278385 TM4SF4P48230 202 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 NEK4P51957 841 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 USP14P54578 494 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 HSP90AA2PQ14568 343 aaPredicted RBP5.3□□□□□ -1.56
CD44-202ENST00000278385 INAVAQ3KP66 663 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 ADGRF1Q5T601 910 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 AGAP9Q5VTM2 703 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 GALNT5Q7Z7M9 940 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 TBC1D1Q86TI0 1168 aaPredicted RBP5.3□□□□□ -1.56
CD44-202ENST00000278385 TRIM59Q8IWR1 403 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 FAM26EQ8N5C1 309 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 NUP133Q8WUM0 1156 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 INTS4Q96HW7 963 aaKnown RBP5.3□□□□□ -1.56
CD44-202ENST00000278385 SGCZQ96LD1 299 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 CDC6Q99741 560 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 CYP26B1Q9NR63 512 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 C1orf112Q9NSG2 853 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 ARHGAP28Q9P2N2 729 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 TMCC3Q9ULS5 477 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 ZNF652Q9Y2D9 606 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 ZNF281Q9Y2X9 895 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 SLC4A7Q9Y6M7 1214 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 PXDNQ92626 1479 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 TNS3Q68CZ2 1445 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 LAMC1P11047 1609 aa5.3□□□□□ -1.56
CD44-202ENST00000278385 IFT172Q9UG01 1749 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 TRBV23-1A0A0A0MS06 115 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 hCG_1642624A0A1W2PR95 340 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 RBAK-RBAKDNI3L0D1 243 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 TOR1BO14657 336 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 PLOD3O60568 738 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 PRKD3O94806 890 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 MYBL2P10244 700 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 PYGMP11217 842 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 RHCEP18577 417 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 ID4P47928 161 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 TDO2P48775 406 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 MMP14P50281 582 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 MPP1Q00013 466 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 RHDQ02161 417 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 G3BP1Q13283 466 aaKnown RBP eCLIP5.29□□□□□ -1.56
CD44-202ENST00000278385 HSF5Q4G112 596 aaPredicted RBP5.29□□□□□ -1.56
CD44-202ENST00000278385 PRR16Q569H4 304 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 SLC10A5Q5PT55 438 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 RTP2Q5QGT7 225 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 VPS53Q5VIR6 699 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 SPATA1Q5VX52 437 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 LMBRD2Q68DH5 695 aaPredicted RBP5.29□□□□□ -1.56
CD44-202ENST00000278385 GTF2IRD2BQ6EKJ0 949 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 FAAH2Q6GMR7 532 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 RETSATQ6NUM9 610 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 SWSAP1Q6NVH7 229 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 GTF2IRD2Q86UP8 949 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 ZBTB10Q96DT7 871 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 LRGUKQ96M69 825 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 NUP88Q99567 741 aaPredicted RBP5.29□□□□□ -1.56
CD44-202ENST00000278385 CRB3Q9BUF7 120 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 G6PC3Q9BUM1 346 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 PRKRIP1Q9H875 184 aaPredicted RBP5.29□□□□□ -1.56
CD44-202ENST00000278385 RSAD1Q9HA92 442 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 AGO4Q9HCK5 861 aaKnown RBP5.29□□□□□ -1.56
CD44-202ENST00000278385 SMC4Q9NTJ3 1288 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 SIRT5Q9NXA8 310 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 RRN3Q9NYV6 651 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.29□□□□□ -1.56
CD44-202ENST00000278385 APEX2Q9UBZ4 518 aa5.29□□□□□ -1.56
CD44-202ENST00000278385 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.29□□□□□ -1.56
CD44-202ENST00000278385 APOBEC2Q9Y235 224 aaKnown RBP5.29□□□□□ -1.56
CD44-202ENST00000278385 KNDC1Q76NI1 1749 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 ACEP12821 1306 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 BCL9LQ86UU0 1499 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 ZNF503-AS2A6NEH8 195 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 GOLGA6L6A8MZA4 724 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 M0R3H8 397 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 NFIBO00712 420 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 ARIH2O95376 493 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 PYGLP06737 847 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 ITGAVP06756 1048 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 RPS6KB1P23443 525 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 CHKAP35790 457 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 PEX19P40855 299 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 ECI1P42126 302 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 CORO7P57737 925 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 PSMC1P62191 440 aaKnown RBP5.28□□□□□ -1.56
CD44-202ENST00000278385 KRT83P78385 493 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 SCRN1Q12765 414 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 NR1I3Q14994 352 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 TRIM61Q5EBN2 209 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 BICRALQ6AI39 1079 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 TLDC1Q6P9B6 456 aa5.28□□□□□ -1.56
CD44-202ENST00000278385 UBE2Q1Q7Z7E8 422 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms