RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TRIM49P0CI25 452 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 TRIM49CP0CI26 452 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 GARTP22102 1010 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 SOX10P56693 466 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 JAM2P57087 298 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 GFPT1Q06210 699 aaPredicted RBP16.65■□□□□ 0.26
SF3B4-201ENST00000271628 CCL15Q16663 113 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 TRIM58Q8NG06 486 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 HNRNPLLQ8WVV9 542 aaKnown RBP16.65■□□□□ 0.26
SF3B4-201ENST00000271628 VTI1AQ96AJ9 217 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 PCYT2Q99447 389 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 KIFC3Q9BVG8 833 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 STK33Q9BYT3 514 aa16.65■□□□□ 0.26
SF3B4-201ENST00000271628 SEC31AO94979 1220 aaKnown RBP16.64■□□□□ 0.25
SF3B4-201ENST00000271628 CCDC172P0C7W6 258 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 FERP16591 822 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 ADSSP30520 456 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 STAT1P42224 750 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 NAMPTP43490 491 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 ARID5AQ03989 594 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 ENPEPQ07075 957 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 TARBP2Q15633 366 aaKnown RBP16.64■□□□□ 0.25
SF3B4-201ENST00000271628 SNRNP35Q16560 246 aaKnown RBP16.64■□□□□ 0.25
SF3B4-201ENST00000271628 DHX37Q8IY37 1157 aaKnown RBP16.64■□□□□ 0.25
SF3B4-201ENST00000271628 ABRAQ8N0Z2 381 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 BBXQ8WY36 941 aaPredicted RBP16.64■□□□□ 0.25
SF3B4-201ENST00000271628 EPC1Q9H2F5 836 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 EFCC1Q9HA90 598 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 ST7Q9NRC1 585 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 APEX2Q9UBZ4 518 aa16.64■□□□□ 0.25
SF3B4-201ENST00000271628 ANO9A1A5B4 782 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 BTBD19C9JJ37 291 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 ANKRD63C9JTQ0 380 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 HNRNPDLO14979 420 aaKnown RBP16.63■□□□□ 0.25
SF3B4-201ENST00000271628 TACC1O75410 805 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 ARIH2O95376 493 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 TUBBP07437 444 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 ZBTB48P10074 688 aaPredicted RBP16.63■□□□□ 0.25
SF3B4-201ENST00000271628 ARL2P36404 184 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 STRN3Q13033 797 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 TTLL4Q14679 1199 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 IQCEQ6IPM2 695 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 PLPPR4Q7Z2D5 763 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 VPS36Q86VN1 386 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 RNF10Q8N5U6 811 aaKnown RBP16.63■□□□□ 0.25
SF3B4-201ENST00000271628 POMGNT1Q8WZA1 660 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 CEP89Q96ST8 783 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 GPR20Q99678 358 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 TFR2Q9UP52 801 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 EMSYQ7Z589 1322 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 KIAA0391O15091 583 aaKnown RBP16.63■□□□□ 0.25
SF3B4-201ENST00000271628 SLC26A2P50443 739 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 DLG4P78352 724 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 WHAMMP3Q1A5X7 153 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 CCDC62Q6P9F0 684 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 GLG1Q92896 1179 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 BICD1Q96G01 975 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 FBXL18Q96ME1 805 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.63■□□□□ 0.25
SF3B4-201ENST00000271628 INTS2Q9H0H0 1204 aaKnown RBP16.63■□□□□ 0.25
SF3B4-201ENST00000271628 KIAA1586Q9HCI6 787 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 MORF4L1Q9UBU8 362 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 ADAMTS1Q9UHI8 967 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 ADGRA3Q8IWK6 1321 aa16.63■□□□□ 0.25
SF3B4-201ENST00000271628 CCDC66A2RUB6 948 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 GAS2O43903 313 aaKnown RBP16.62■□□□□ 0.25
SF3B4-201ENST00000271628 MAFO75444 373 aaPredicted RBP16.62■□□□□ 0.25
SF3B4-201ENST00000271628 LGR5O75473 907 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 TXNP10599 105 aaKnown RBP16.62■□□□□ 0.25
SF3B4-201ENST00000271628 PTK2Q05397 1052 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 HSDL1Q3SXM5 330 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 ANKRD13CQ8N6S4 541 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 DEPTORQ8TB45 409 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 SCFD2Q8WU76 684 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 TMEM143Q96AN5 459 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 FUT8Q9BYC5 575 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 DNAJC12Q9UKB3 198 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 RAB21Q9UL25 225 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 DUSP10Q9Y6W6 482 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 IVNS1ABPQ9Y6Y0 642 aa16.62■□□□□ 0.25
SF3B4-201ENST00000271628 MACROD2A1Z1Q3 448 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 K7ERI5 159 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 SASH3O75995 380 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 FBXO16Q8IX29 292 aaPredicted RBP16.61■□□□□ 0.25
SF3B4-201ENST00000271628 GPD1LQ8N335 351 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 MSANTD4Q8NCY6 345 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 TMC2Q8TDI7 906 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 BRI3BPQ8WY22 251 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 SPATA33Q96N06 139 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 ALS2CR12Q96Q35 445 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 RRAGCQ9HB90 399 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 A0A087X0T9 212 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 GFPT2O94808 682 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 FAM228BP0C875 321 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 GLRA2P23416 452 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 SOX5P35711 763 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 LIG4P49917 911 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 MXI1P50539 228 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 PPP3CAQ08209 521 aa16.61■□□□□ 0.25
SF3B4-201ENST00000271628 SMC1AQ14683 1233 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms