RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 TOPORSQ9NS56 1045 aaPredicted RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 NYAP2Q9P242 653 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 ECM2O94769 699 aaPredicted RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 MMEP08473 750 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 CYP3A4P08684 503 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 HOXA10P31260 410 aaPredicted RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 STAT2P52630 851 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 BFSP1Q12934 665 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 TNIP1Q15025 636 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 DENND2CQ68D51 928 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 HHIPL2Q6UWX4 724 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 TMEM179Q6ZVK1 233 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 PRUNE1Q86TP1 453 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 CACNA2D3Q8IZS8 1091 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 ATG4AQ8WYN0 398 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 TBC1D31Q96DN5 1066 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 THOC1Q96FV9 657 aaKnown RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 MBOAT7Q96N66 472 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 PCDHB18PQ96TA0 734 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 ELAC2Q9BQ52 826 aaKnown RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 DDX23Q9BUQ8 820 aaKnown RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 TRIM7Q9C029 511 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.85□□□□□ -0.83
MSH4-201ENST00000263187 ARFGEF1Q9Y6D6 1849 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 SLC16A4O15374 487 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 ECE2O60344 883 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 MMP10P09238 476 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 TMEM253P0C7T8 217 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 LONRF1Q17RB8 773 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 LMBRD2Q68DH5 695 aaPredicted RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 KIRREL3Q8IZU9 778 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 ANKRD42Q8N9B4 389 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 PRPF38AQ8NAV1 312 aaKnown RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 CALR3Q96L12 384 aaKnown RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 AGBL1Q96MI9 1066 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 FIZ1Q96SL8 496 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 PI4K2AQ9BTU6 479 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 WDR11Q9BZH6 1224 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 KLC4Q9NSK0 619 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 TBK1Q9UHD2 729 aa9.85□□□□□ -0.83
MSH4-201ENST00000263187 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.85□□□□□ -0.83
MSH4-201ENST00000263187 IPO5O00410 1097 aaKnown RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 SLC16A3O15427 465 aaKnown RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 RGS16O15492 202 aaPredicted RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 POLR2MP0CAP2 368 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 CDR1P51861 262 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 HP1BP3Q5SSJ5 553 aaPredicted RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 FAM182AQ5T1J6 154 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 CCDC137Q6PK04 289 aaKnown RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 PADI6Q6TGC4 694 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 LRIG3Q6UXM1 1119 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 ARHGAP27Q6ZUM4 889 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 CNPY4Q8N129 248 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 RASGEF1CQ8N431 466 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 PRELID2Q8N945 189 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 IL31RAQ8NI17 732 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 MRRFQ96E11 262 aaKnown RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 GLT8D2Q9H1C3 349 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 SLITRK6Q9H5Y7 841 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 FAM114A2Q9NRY5 505 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 CTNNAL1Q9UBT7 734 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 BTNL10A8MVZ5 291 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 CLDN3O15551 220 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 PSMD10O75832 226 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 APBA3O96018 575 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 FOSP01100 380 aaPredicted RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 PRELPP51888 382 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 NPEPPSP55786 919 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 PTENP60484 403 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 SETQ01105 290 aaPredicted RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 POU5F1Q01860 360 aaKnown RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 PPATQ06203 517 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 BYSLQ13895 437 aaKnown RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 GKAP1Q5VSY0 366 aaPredicted RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 PLA2G4FQ68DD2 849 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 LRRC34Q8IZ02 419 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 DAW1Q8N136 415 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 PLEKHO2Q8TD55 490 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 MKL1Q969V6 931 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 ZDHHC15Q96MV8 337 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 POLR3CQ9BUI4 534 aaPredicted RBP9.84□□□□□ -0.83
MSH4-201ENST00000263187 HEMGNQ9BXL5 484 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 EPB41L4BQ9H329 900 aa9.84□□□□□ -0.83
MSH4-201ENST00000263187 CCDC169A6NNP5 214 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 PEX3P56589 373 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 MTMR3Q13615 1198 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 PPP1R7Q15435 360 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 ZKSCAN8Q15776 578 aaPredicted RBP9.83□□□□□ -0.84
MSH4-201ENST00000263187 CEP55Q53EZ4 464 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 ZDHHC24Q6UX98 284 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 NOP9Q86U38 636 aaKnown RBP9.83□□□□□ -0.84
MSH4-201ENST00000263187 GDAP1Q8TB36 358 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 NEK9Q8TD19 979 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 RAB17Q9H0T7 212 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 OLFML3Q9NRN5 406 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 NENFQ9UMX5 172 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 ZBTB12Q9Y330 459 aaPredicted RBP9.83□□□□□ -0.84
MSH4-201ENST00000263187 ANKRD62A6NC57 917 aa9.83□□□□□ -0.84
MSH4-201ENST00000263187 KIAA0391O15091 583 aaKnown RBP9.83□□□□□ -0.84
MSH4-201ENST00000263187 RAD17O75943 681 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms