RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TDRD3Q9H7E2 651 aaKnown RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 HAUS2Q9NVX0 235 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 CTTNBP2NLQ9P2B4 639 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 GGT7Q9UJ14 662 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 NENFQ9UMX5 172 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 ATRNL1Q5VV63 1379 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 TCRBV7S2A1N4TA0A589 114 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 A6NNZ2 444 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 FOXO6A8MYZ6 492 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 EXOC3O60645 756 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 EYA4O95677 639 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 FGFR4P22455 802 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 ECE1P42892 770 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 KCNJ1P48048 391 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 IFNAR2P48551 515 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 ZNF280AP59817 542 aaPredicted RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 IFI35P80217 286 aaPredicted RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 MESDQ14696 234 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 TUBB8Q3ZCM7 444 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 SYDE2Q5VT97 1194 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 CCDC25Q86WR0 208 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 FAM178BQ8IXR5 827 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 SYCE1Q8N0S2 351 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 RFFLQ8WZ73 363 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 MBOAT7Q96N66 472 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 ZBTB21Q9ULJ3 1066 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 ZBTB12Q9Y330 459 aaPredicted RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 DAAM1Q9Y4D1 1078 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 A0A1W2PRG0 241 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 CTNND1O60716 968 aaKnown RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 FSBPO95073 299 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 CALCAP01258 141 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 RRP1BQ14684 758 aaKnown RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 SLC30A5Q8TAD4 765 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 BORCS6Q96GS4 357 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 NAP1L4Q99733 375 aaKnown RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 AZI2Q9H6S1 392 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 SLC40A1Q9NP59 571 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 UBE2TQ9NPD8 197 aaPredicted RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 DNAJC17Q9NVM6 304 aaKnown RBP10.86□□□□□ -0.67
LIG3-201ENST00000262327 PI4KBQ9UBF8 816 aa10.86□□□□□ -0.67
LIG3-201ENST00000262327 SREBF1P36956 1147 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 POU5F1Q01860 360 aaKnown RBP10.85□□□□□ -0.67
LIG3-201ENST00000262327 AP3B2Q13367 1082 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 BYSLQ13895 437 aaKnown RBP10.85□□□□□ -0.67
LIG3-201ENST00000262327 SLC29A2Q14542 456 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 SPDYE2Q495Y8 402 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 Q4G0T1 1027 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 PHLDB2Q86SQ0 1253 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 ZDHHC14Q8IZN3 488 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 RNF25Q96BH1 459 aaPredicted RBP10.85□□□□□ -0.67
LIG3-201ENST00000262327 FAM84AQ96KN4 292 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 CCDC17Q96LX7 622 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 POP1Q99575 1024 aaKnown RBP10.85□□□□□ -0.67
LIG3-201ENST00000262327 STK33Q9BYT3 514 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 SEMA4AQ9H3S1 761 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 SLITRK6Q9H5Y7 841 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 PARVGQ9HBI0 331 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 ZNF70Q9UC06 446 aaPredicted RBP10.85□□□□□ -0.67
LIG3-201ENST00000262327 ALG6Q9Y672 507 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 CES2O00748 559 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 HGSO14964 777 aaPredicted RBP10.85□□□□□ -0.67
LIG3-201ENST00000262327 PPP1R12BO60237 982 aaPredicted RBP10.85□□□□□ -0.67
LIG3-201ENST00000262327 CHN1P15882 459 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 LMNB1P20700 586 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 GCLMP48507 274 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 PRELPP51888 382 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 MYL7Q01449 175 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 ABCB5Q2M3G0 1257 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 C6orf89Q6UWU4 347 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 NSMFQ6X4W1 530 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 JAMLQ86YT9 394 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 ARHGEF19Q8IW93 802 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 VCPKMTQ9H867 229 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 MLXIPLQ9NP71 852 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 AGPAT3Q9NRZ7 376 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 KLC4Q9NSK0 619 aa10.85□□□□□ -0.67
LIG3-201ENST00000262327 TMEM150BA6NC51 233 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 ANKRD63C9JTQ0 380 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 FTLP02792 175 aaPredicted RBP10.84□□□□□ -0.67
LIG3-201ENST00000262327 PPATQ06203 517 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 BIRC3Q13489 604 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 KIAA1755Q5JYT7 1200 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 EMC10Q5UCC4 262 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 C1orf186Q6ZWK4 172 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 HS2ST1Q7LGA3 356 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 CEP57Q86XR8 500 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 CACNA2D3Q8IZS8 1091 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 MGARPQ8TDB4 240 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 DCAF4Q8WV16 495 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 SCLT1Q96NL6 688 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 ERP44Q9BS26 406 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 SYT17Q9BSW7 474 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 EPB41L4BQ9H329 900 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 FAM114A2Q9NRY5 505 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 DBR1Q9UK59 544 aaKnown RBP10.84□□□□□ -0.67
LIG3-201ENST00000262327 FRMD4BQ9Y2L6 1034 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 GOLGA8IPA6NC78 632 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 GOLGA8JA6NMD2 632 aa10.84□□□□□ -0.67
LIG3-201ENST00000262327 SLC16A3O15427 465 aaKnown RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms