RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 DDX50Q9BQ39 737 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 TRAIPQ9BWF2 469 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 TRPV6Q9H1D0 765 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 ANGPTL2Q9UKU9 493 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 AGO2Q9UKV8 859 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 A0A0G2JLW4 131 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 CCDC195A0A1B0GUA6 201 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 A8MXQ7 604 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 KIF28PB7ZC32 967 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 APOL1O14791 398 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 HDLBPQ00341 1268 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 KLHL38Q2WGJ6 581 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 GLE1Q53GS7 698 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 C11orf70Q9BRQ4 267 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 MTA3Q9BTC8 594 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 OSBPL5Q9H0X9 879 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 SUDS3Q9H7L9 328 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 ZNRF3Q9ULT6 936 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 STAP1Q9ULZ2 295 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 PREX1Q8TCU6 1659 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 INO80Q9ULG1 1556 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 SPATA31A1Q5TZJ5 1347 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 GRID2IPA4D2P6 1211 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 SPECC1L-ADORA2AF8WAN1 911 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 SLC16A3O15427 465 aaKnown RBP9.27□□□□□ -0.92
PTCD3-201ENST00000254630 CTIFO43310 598 aaKnown RBP9.27□□□□□ -0.92
PTCD3-201ENST00000254630 SDC4P31431 198 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 TFDP2Q14188 446 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 MXD4Q14582 209 aaPredicted RBP9.27□□□□□ -0.92
PTCD3-201ENST00000254630 DRAP1Q14919 205 aaPredicted RBP9.27□□□□□ -0.92
PTCD3-201ENST00000254630 SLC10A5Q5PT55 438 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 TRIM72Q6ZMU5 477 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 SCG3Q8WXD2 468 aaKnown RBP9.27□□□□□ -0.92
PTCD3-201ENST00000254630 DRC3Q9H069 523 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 WNT8AQ9H1J5 351 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 DIP2BQ9P265 1576 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 RIMBP3CA6NJZ7 1639 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 RIMBP3BA6NNM3 1639 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 RIMBP3Q9UFD9 1639 aa9.27□□□□□ -0.92
PTCD3-201ENST00000254630 E5RI56 91 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 CTNND1O60716 968 aaKnown RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 NR1D1P20393 614 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 NNMTP40261 264 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 SNAPC2Q13487 334 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 IMPG1Q17R60 797 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 TTC8Q8TAM2 541 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 MAGEB5Q9BZ81 275 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 PARVAQ9NVD7 372 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 PACSIN2Q9UNF0 486 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 PP2D1A8MPX8 630 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 MAP3K7O43318 606 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 EPHA7Q15375 998 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 STRIP1Q5VSL9 837 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 ITPRIPL1Q6GPH6 555 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 SARM1Q6SZW1 724 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 ENOSF1Q7L5Y1 443 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 ADAMTS1Q9UHI8 967 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 CCDC188H7C350 402 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 EYA4O95677 639 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 MX2P20592 715 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 ACCSLQ4AC99 568 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 NSUN4Q96CB9 384 aaKnown RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 CCDC124Q96CT7 223 aaKnown RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 TRPC7Q9HCX4 862 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 GTSE1Q9NYZ3 720 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 ZNF70Q9UC06 446 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 PIN4Q9Y237 131 aaKnown RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 KPNA7A9QM74 516 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 APOEP02649 317 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 C12orf60Q5U649 245 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 ATG9AQ7Z3C6 839 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 FBXO41Q8TF61 875 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 PARK7Q99497 189 aaKnown RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 TMEM247A6NEH6 219 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 MAPK13O15264 365 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 CFLARO15519 480 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 SMARCA1P28370 1054 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 SH3BGRP55822 239 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 COPS2P61201 443 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 DCAF4L1Q3SXM0 396 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 BTBD8Q5XKL5 378 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 FRMD5Q7Z6J6 570 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 PDCD7Q8N8D1 485 aaKnown RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 MORC4Q8TE76 937 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 EDEM3Q9BZQ6 932 aa9.27□□□□□ -0.93
PTCD3-201ENST00000254630 FARP1Q9Y4F1 1045 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-201ENST00000254630 NEMP1O14524 444 aa9.26□□□□□ -0.93
PTCD3-201ENST00000254630 SRGAP2O75044 1071 aa9.26□□□□□ -0.93
PTCD3-201ENST00000254630 TXNP10599 105 aaKnown RBP9.26□□□□□ -0.93
PTCD3-201ENST00000254630 EFNA5P52803 228 aa9.26□□□□□ -0.93
PTCD3-201ENST00000254630 ATP2C1P98194 919 aaPredicted RBP9.26□□□□□ -0.93
PTCD3-201ENST00000254630 OCRLQ01968 901 aa9.26□□□□□ -0.93
PTCD3-201ENST00000254630 HEATR6Q6AI08 1181 aaKnown RBP9.26□□□□□ -0.93
PTCD3-201ENST00000254630 N4BP2L2Q92802 583 aaPredicted RBP9.26□□□□□ -0.93
PTCD3-201ENST00000254630 SNF8Q96H20 258 aa9.26□□□□□ -0.93
PTCD3-201ENST00000254630 VPS39Q96JC1 886 aa9.26□□□□□ -0.93
PTCD3-201ENST00000254630 ZFYVE28Q9HCC9 887 aa9.26□□□□□ -0.93
PTCD3-201ENST00000254630 POLD4Q9HCU8 107 aa9.26□□□□□ -0.93
PTCD3-201ENST00000254630 ABCB6Q9NP58 842 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms