RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.4■■□□□ 1.66
LSM4-201ENST00000252816 BMP15O95972 392 aa25.4■■□□□ 1.66
LSM4-201ENST00000252816 KCNQ1P51787 676 aa25.4■■□□□ 1.66
LSM4-201ENST00000252816 CSPP1Q1MSJ5 1256 aa25.4■■□□□ 1.66
LSM4-201ENST00000252816 NOMO2Q5JPE7 1267 aa25.4■■□□□ 1.66
LSM4-201ENST00000252816 CDR2LQ86X02 465 aaPredicted RBP25.4■■□□□ 1.66
LSM4-201ENST00000252816 ZNF558Q96NG5 402 aa25.4■■□□□ 1.66
LSM4-201ENST00000252816 CSRNP2Q9H175 543 aa25.4■■□□□ 1.66
LSM4-201ENST00000252816 FZD8Q9H461 694 aa25.4■■□□□ 1.66
LSM4-201ENST00000252816 TBC1D13Q9NVG8 400 aa25.4■■□□□ 1.66
LSM4-201ENST00000252816 PCDHGC5Q9Y5F6 944 aa25.4■■□□□ 1.66
LSM4-201ENST00000252816 TTLL13PA6NNM8 815 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 NCLP19338 710 aaKnown RBP25.39■■□□□ 1.66
LSM4-201ENST00000252816 NAMPTP43490 491 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 AFF1P51825 1210 aaKnown RBP25.39■■□□□ 1.66
LSM4-201ENST00000252816 NCBP1Q09161 790 aaKnown RBP25.39■■□□□ 1.66
LSM4-201ENST00000252816 COL19A1Q14993 1142 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 RINT1Q6NUQ1 792 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 PPP4R3CPQ6ZMV5 832 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 ZBTB8OSQ8IWT0 167 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 DAW1Q8N136 415 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 KIFAP3Q92845 792 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 KIFC3Q9BVG8 833 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 RNF39Q9H2S5 420 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 IPPQ9Y573 584 aa25.39■■□□□ 1.66
LSM4-201ENST00000252816 STX6O43752 255 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 BMP1P13497 986 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 GTF2F1P35269 517 aaKnown RBP eCLIP25.38■■□□□ 1.65
LSM4-201ENST00000252816 UBE3AQ05086 875 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 HYAL1Q12794 435 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 PTPAQ15257 358 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 FAM187BQ17R55 369 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 AAK1Q2M2I8 961 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 TMEM119Q4V9L6 283 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 C1orf186Q6ZWK4 172 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 CABP7Q86V35 215 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 HSCBQ8IWL3 235 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 RSPH1Q8WYR4 309 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 AK8Q96MA6 479 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 CCDC113Q9H0I3 377 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 C2orf40Q9H1Z8 148 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 RSAD1Q9HA92 442 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 PRMT7Q9NVM4 692 aaPredicted RBP25.38■■□□□ 1.65
LSM4-201ENST00000252816 HES2Q9Y543 173 aa25.38■■□□□ 1.65
LSM4-201ENST00000252816 A0A1B0GUA9 196 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 B4GALT3O60512 393 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 EDN1P05305 212 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 BCAR1P56945 870 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 ERVFC1P60507 584 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 PLCB3Q01970 1234 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 PPP2R5AQ15172 486 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 ADGRD2Q7Z7M1 963 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 SLC39A11Q8N1S5 342 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 CNNM3Q8NE01 707 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 DEPTORQ8TB45 409 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 IFT74Q96LB3 600 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 PRIMPOLQ96LW4 560 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 NT5C3AQ9H0P0 336 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 NRDE2Q9H7Z3 1164 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 SPG21Q9NZD8 308 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 USP20Q9Y2K6 914 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 CNTNAP2Q9UHC6 1331 aa25.37■■□□□ 1.65
LSM4-201ENST00000252816 HIP1RO75146 1068 aa25.36■■□□□ 1.65
LSM4-201ENST00000252816 KCNA5P22460 613 aa25.36■■□□□ 1.65
LSM4-201ENST00000252816 MAPK7Q13164 816 aa25.36■■□□□ 1.65
LSM4-201ENST00000252816 LRRC15Q8TF66 581 aa25.36■■□□□ 1.65
LSM4-201ENST00000252816 MRPS27Q92552 414 aaKnown RBP25.36■■□□□ 1.65
LSM4-201ENST00000252816 SYMPKQ92797 1274 aaKnown RBP25.36■■□□□ 1.65
LSM4-201ENST00000252816 PABPC5Q96DU9 382 aaKnown RBP25.36■■□□□ 1.65
LSM4-201ENST00000252816 CDK5RAP3Q96JB5 506 aa25.36■■□□□ 1.65
LSM4-201ENST00000252816 NXF3Q9H4D5 531 aaKnown RBP25.36■■□□□ 1.65
LSM4-201ENST00000252816 TLR9Q9NR96 1032 aa25.36■■□□□ 1.65
LSM4-201ENST00000252816 LZTS1Q9Y250 596 aa25.36■■□□□ 1.65
LSM4-201ENST00000252816 NT5C1B-RDH14C9J2C7 533 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 ZC3H11AO75152 810 aaKnown RBP eCLIP25.35■■□□□ 1.65
LSM4-201ENST00000252816 NPTXRO95502 500 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 PRKCBP05771 671 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 ITGA4P13612 1032 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 PPM1AP35813 382 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 LONP1P36776 959 aaKnown RBP25.35■■□□□ 1.65
LSM4-201ENST00000252816 SLC12A3P55017 1021 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 MAPK6Q16659 721 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 CTC1Q2NKJ3 1217 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 SLC27A1Q6PCB7 646 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 TMEM173Q86WV6 379 aaPredicted RBP25.35■■□□□ 1.65
LSM4-201ENST00000252816 ZNF280BQ86YH2 543 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 KCTD17Q8N5Z5 321 aa25.35■■□□□ 1.65
LSM4-201ENST00000252816 SYT2Q8N9I0 419 aaPredicted RBP25.35■■□□□ 1.65
LSM4-201ENST00000252816 ACKR2O00590 384 aa25.34■■□□□ 1.65
LSM4-201ENST00000252816 FSCN2O14926 492 aa25.34■■□□□ 1.65
LSM4-201ENST00000252816 SSBP05455 408 aaKnown RBP eCLIP25.34■■□□□ 1.65
LSM4-201ENST00000252816 PLA2G4BP0C869 781 aa25.34■■□□□ 1.65
LSM4-201ENST00000252816 LIG1P18858 919 aa25.34■■□□□ 1.65
LSM4-201ENST00000252816 MARCKSP29966 332 aaPredicted RBP25.34■■□□□ 1.65
LSM4-201ENST00000252816 UBA7P41226 1012 aa25.34■■□□□ 1.65
LSM4-201ENST00000252816 ALDH7A1P49419 539 aaKnown RBP25.34■■□□□ 1.65
LSM4-201ENST00000252816 PEX3P56589 373 aa25.34■■□□□ 1.65
LSM4-201ENST00000252816 RNASELQ05823 741 aaKnown RBP25.34■■□□□ 1.65
LSM4-201ENST00000252816 URGCPQ8TCY9 931 aa25.34■■□□□ 1.65
LSM4-201ENST00000252816 MICAL1Q8TDZ2 1067 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms