RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 ADORA1P30542 326 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 MLH1P40692 756 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 MIS18BP1Q6P0N0 1132 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 KCTD6Q8NC69 237 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 ZNF577Q9BSK1 485 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 MAGI2Q86UL8 1455 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 A0A1B0GTH6 734 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 TMEM120BA0PK00 339 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 WDR93Q6P2C0 686 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 MMGT1Q8N4V1 131 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 ZNF579Q8NAF0 562 aaKnown RBP11.09□□□□□ -0.63
VCL-201ENST00000211998 PI4K2BQ8TCG2 481 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 SLC7A3Q8WY07 619 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 ACCSQ96QU6 501 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 TRIM51Q9BSJ1 452 aa11.09□□□□□ -0.63
VCL-201ENST00000211998 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.09□□□□□ -0.632e-6■■■■□ 23.9
VCL-201ENST00000211998 ATP9AO75110 1047 aa11.08□□□□□ -0.63
VCL-201ENST00000211998 STAT4Q14765 748 aa11.08□□□□□ -0.63
VCL-201ENST00000211998 EFTUD2Q15029 972 aaKnown RBP eCLIP11.08□□□□□ -0.632e-6■■■□□ 18.1
VCL-201ENST00000211998 ZNF772Q68DY9 489 aaPredicted RBP11.08□□□□□ -0.63
VCL-201ENST00000211998 LRRC8EQ6NSJ5 796 aa11.08□□□□□ -0.63
VCL-201ENST00000211998 TMC5Q6UXY8 1006 aa11.08□□□□□ -0.63
VCL-201ENST00000211998 ZBED8Q8IZ13 594 aa11.08□□□□□ -0.63
VCL-201ENST00000211998 ZNF483Q8TF39 744 aaPredicted RBP11.08□□□□□ -0.63
VCL-201ENST00000211998 ANKRD36BP1Q96IX9 119 aa11.08□□□□□ -0.63
VCL-201ENST00000211998 CNBD2Q96M20 576 aa11.08□□□□□ -0.63
VCL-201ENST00000211998 UGGT1Q9NYU2 1555 aa11.08□□□□□ -0.63
VCL-201ENST00000211998 ZBTB1Q9Y2K1 713 aa11.08□□□□□ -0.63
VCL-201ENST00000211998 ARIH1Q9Y4X5 557 aaPredicted RBP11.08□□□□□ -0.63
VCL-201ENST00000211998 WDR64B1ANS9 1081 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 HNRNPDLO14979 420 aaKnown RBP11.08□□□□□ -0.64
VCL-201ENST00000211998 Q4G0T1 1027 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 FAM83BQ5T0W9 1011 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 TMED8Q6PL24 325 aaPredicted RBP11.08□□□□□ -0.64
VCL-201ENST00000211998 PLD3Q8IV08 490 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 SPATA17Q96L03 361 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 TSSK1BQ9BXA7 367 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 PUS3Q9BZE2 481 aaKnown RBP11.08□□□□□ -0.64
VCL-201ENST00000211998 SLC13A1Q9BZW2 595 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 TMEM206Q9H813 350 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 A0A1W2PQC6 194 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 TJP3O95049 919 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 EIF2B2P49770 351 aaKnown RBP11.08□□□□□ -0.64
VCL-201ENST00000211998 PREPLQ4J6C6 727 aaPredicted RBP11.08□□□□□ -0.64
VCL-201ENST00000211998 KIAA1755Q5JYT7 1200 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 ATP6V1E2Q96A05 226 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 FAF2Q96CS3 445 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 OMA1Q96E52 524 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 NSL1Q96IY1 281 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 MPP4Q96JB8 637 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 SEPT9Q9UHD8 586 aaPredicted RBP11.08□□□□□ -0.64
VCL-201ENST00000211998 ASAP1Q9ULH1 1129 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 RAD51CO43502 376 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 STRNO43815 780 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 NPR1P16066 1061 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 TBL3Q12788 808 aaKnown RBP11.08□□□□□ -0.64
VCL-201ENST00000211998 PDIA2Q13087 525 aaKnown RBP11.08□□□□□ -0.64
VCL-201ENST00000211998 KYNUQ16719 465 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 DNAJC24Q6P3W2 148 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 RINLQ6ZS11 566 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 DDI1Q8WTU0 396 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 NCLNQ969V3 563 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 NACC1Q96RE7 527 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 SMG5Q9UPR3 1016 aaKnown RBP11.08□□□□□ -0.64
VCL-201ENST00000211998 AURKCQ9UQB9 309 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 ERVK-7P63135 1459 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 ARHGEF37A1IGU5 675 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 KPNA7A9QM74 516 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 IL10P22301 178 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 CCND2P30279 289 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 ITKQ08881 620 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 BBS5Q8N3I7 341 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 PPM1NQ8N819 430 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 KLC2Q9H0B6 622 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 BRD8Q9H0E9 1235 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 SENP1Q9P0U3 644 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 SERPINB13Q9UIV8 391 aa11.08□□□□□ -0.64
VCL-201ENST00000211998 S100A5P33763 92 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 FXR1P51114 621 aaKnown RBP eCLIP11.07□□□□□ -0.642e-6■■■□□ 15.2
VCL-201ENST00000211998 CCDC80Q76M96 950 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 DPP9Q86TI2 863 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 CAAP1Q9H8G2 361 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 QTRT2Q9H974 415 aaKnown RBP11.07□□□□□ -0.64
VCL-201ENST00000211998 METP08581 1390 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 PECAM1P16284 738 aaPredicted RBP11.07□□□□□ -0.64
VCL-201ENST00000211998 VCAM1P19320 739 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 CDC25CP30307 473 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 COPB2P35606 906 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 DEFA1P59665 94 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 DEFA3P59666 94 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 INAQ16352 499 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 CDC37Q16543 378 aaPredicted RBP11.07□□□□□ -0.64
VCL-201ENST00000211998 KLC3Q6P597 504 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 PDXDC1Q6P996 788 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 HEATR4Q86WZ0 1026 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 CCDC103Q8IW40 242 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.07□□□□□ -0.64
VCL-201ENST00000211998 ANKRD27Q96NW4 1050 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 AP5M1Q9H0R1 490 aa11.07□□□□□ -0.64
VCL-201ENST00000211998 PARVGQ9HBI0 331 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms