RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	URA10	P30402	227 aa		1.78	□□□□□ -2.12
PKR1	YMR123W	PUP2	P32379	260 aa		1.78	□□□□□ -2.12
PKR1	YMR123W	BDH1	P39714	382 aa		1.78	□□□□□ -2.12
PKR1	YMR123W	EAF6	P47128	113 aa		1.78	□□□□□ -2.12
PKR1	YMR123W	AIM33	Q04516	312 aa		1.78	□□□□□ -2.12
PKR1	YMR123W	YDR018C	Q12185	396 aa		1.78	□□□□□ -2.12
PKR1	YMR123W	SFG1	Q12507	346 aa		1.78	□□□□□ -2.12
PKR1	YMR123W	FSH3	Q99369	266 aa		1.78	□□□□□ -2.12
PKR1	YMR123W	URB1	P34241	1764 aa	Known RBP	1.77	□□□□□ -2.13
PKR1	YMR123W	FLO11	P08640	1367 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	SPT7	P35177	1332 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	RPL6B	P05739	176 aa	Known RBP	1.77	□□□□□ -2.13
PKR1	YMR123W	GRR1	P24814	1151 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	1.77	□□□□□ -2.13	not detected
PKR1	YMR123W	YIL059C	P40520	121 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	SNL1	P40548	159 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	YJL144W	P47009	104 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	LSG1	P53145	640 aa	Known RBP	1.77	□□□□□ -2.13
PKR1	YMR123W	SMD1	Q02260	146 aa	Predicted RBP	1.77	□□□□□ -2.13
PKR1	YMR123W	RPL6A	Q02326	176 aa	Known RBP	1.77	□□□□□ -2.13
PKR1	YMR123W	GMC1	Q04399	608 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	FAR10	Q06001	478 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	HRT1	Q08273	121 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	YDL211C	Q12121	372 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	NFI1	Q12216	726 aa		1.77	□□□□□ -2.13
PKR1	YMR123W	AIM45	Q12480	344 aa	Known RBP	1.77	□□□□□ -2.13
PKR1	YMR123W	YLR419W	Q06698	1435 aa	Known RBP	1.76	□□□□□ -2.13
PKR1	YMR123W	TY4B-H	P0C2J7	1802 aa		1.76	□□□□□ -2.13
PKR1	YMR123W	TY4B-J	P47024	1803 aa		1.76	□□□□□ -2.13
PKR1	YMR123W	RPS24A	P0CX31	135 aa	Known RBP	1.76	□□□□□ -2.13
PKR1	YMR123W	RPS24B	P0CX32	135 aa	Known RBP	1.76	□□□□□ -2.13
PKR1	YMR123W	CUP2	P15315	225 aa		1.76	□□□□□ -2.13
PKR1	YMR123W	POT1	P27796	417 aa	Known RBP RIP-Chip data	1.76	□□□□□ -2.13	not detected
PKR1	YMR123W	YKL071W	P36086	256 aa		1.76	□□□□□ -2.13
PKR1	YMR123W	IST2	P38250	946 aa		1.76	□□□□□ -2.13
PKR1	YMR123W	TAE1	P38340	232 aa		1.76	□□□□□ -2.13
PKR1	YMR123W	APE4	P38821	490 aa		1.76	□□□□□ -2.13
PKR1	YMR123W	ATG7	P38862	630 aa		1.76	□□□□□ -2.13
PKR1	YMR123W	UTP6	Q02354	440 aa	Known RBP	1.76	□□□□□ -2.13
PKR1	YMR123W	TFB5	Q3E7C1	72 aa	Predicted RBP	1.76	□□□□□ -2.13
PKR1	YMR123W	FKS3	Q04952	1785 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	SIR4	P11978	1358 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	MHP1	P43638	1398 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	SNF2	P22082	1703 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	VPS63	O13549	108 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	CKI1	P20485	582 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	FAA1	P30624	700 aa	Known RBP	1.75	□□□□□ -2.13
PKR1	YMR123W	MRPS5	P33759	307 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	PCH2	P38126	564 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	RRG9	P40156	214 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	YNL320W	P42840	284 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	YFR018C	P43599	363 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	UTP15	Q04305	513 aa	Known RBP	1.75	□□□□□ -2.13
PKR1	YMR123W	CSM3	Q04659	317 aa		1.75	□□□□□ -2.13
PKR1	YMR123W	DIB1	Q06819	143 aa	Predicted RBP	1.75	□□□□□ -2.13
PKR1	YMR123W	PML1	Q07930	204 aa	Predicted RBP	1.75	□□□□□ -2.13
PKR1	YMR123W	YPR096C	O13587	100 aa		1.74	□□□□□ -2.13
PKR1	YMR123W	HSP82	P02829	709 aa	Known RBP	1.74	□□□□□ -2.13
PKR1	YMR123W	DAL5	P15365	543 aa		1.74	□□□□□ -2.13
PKR1	YMR123W	THR4	P16120	514 aa	Known RBP	1.74	□□□□□ -2.13
PKR1	YMR123W	CPT1	P17898	393 aa		1.74	□□□□□ -2.13
PKR1	YMR123W	ARF2	P19146	181 aa	Known RBP	1.74	□□□□□ -2.13
PKR1	YMR123W	UBA1	P22515	1024 aa	Known RBP	1.74	□□□□□ -2.13
PKR1	YMR123W	MKK1	P32490	508 aa		1.74	□□□□□ -2.13
PKR1	YMR123W	YMR262W	P38430	313 aa		1.74	□□□□□ -2.13
PKR1	YMR123W	YNR068C	P53754	272 aa		1.74	□□□□□ -2.13
PKR1	YMR123W	SMP3	Q04174	516 aa		1.74	□□□□□ -2.13
PKR1	YMR123W	RRB1	Q04225	511 aa	Known RBP	1.74	□□□□□ -2.13
PKR1	YMR123W	TAF10	Q12030	206 aa		1.74	□□□□□ -2.13
PKR1	YMR123W	RPN6	Q12377	434 aa		1.74	□□□□□ -2.13
PKR1	YMR123W	DFM1	Q12743	341 aa	Known RBP	1.74	□□□□□ -2.13
PKR1	YMR123W	RPO41	P13433	1351 aa	Known RBP	1.73	□□□□□ -2.13
PKR1	YMR123W	MAS1	P10507	462 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	RDS1	P25611	832 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	ERG9	P29704	444 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	LAS1	P36146	502 aa	Predicted RBP	1.73	□□□□□ -2.13
PKR1	YMR123W	SIF2	P38262	535 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	YHR122W	P38829	231 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	YCH1	P42937	148 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	MIC19	P43594	170 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	NRM1	P53718	249 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	YNL143C	P53908	130 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	RCF1	Q03713	159 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	ECM19	Q06011	112 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	APC5	Q08683	685 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	SKS1	Q12505	502 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	APC1	P53886	1748 aa		1.73	□□□□□ -2.13
PKR1	YMR123W	STE3	P06783	470 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	HMX1	P32339	317 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	SWI3	P32591	825 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	PEX32	P38292	413 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	YMR134W	P40207	237 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	YHC3	P47040	408 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	EOS1	P53938	366 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	NAT4	Q04751	285 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	YDR286C	Q05530	114 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	SPH1	Q06160	661 aa		1.72	□□□□□ -2.13
PKR1	YMR123W	PRP46	Q12417	451 aa	Predicted RBP	1.72	□□□□□ -2.13
PKR1	YMR123W	RPS23A	P0CX29	145 aa	Known RBP	1.71	□□□□□ -2.14
PKR1	YMR123W	RPS23B	P0CX30	145 aa		1.71	□□□□□ -2.14

Retrieved 100 of 5,963 RNA–protein pairs in 19.5 ms