RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	SLX9	P53251	210 aa	Predicted RBP	4.22	□□□□□ -1.73
CDC48	YDL126C	BIO4	P53630	237 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	DID2	P69771	204 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	YPL113C	Q02961	396 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	ARG7	Q04728	441 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	YMR226C	Q05016	267 aa	Known RBP	4.22	□□□□□ -1.73
CDC48	YDL126C	GRX8	Q05926	109 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	ECM30	Q06673	1274 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	YLR040C	Q07988	224 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	BSC6	Q08280	497 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	SRO7	Q12038	1033 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	INP53	Q12271	1107 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	RPN6	Q12377	434 aa		4.22	□□□□□ -1.73
CDC48	YDL126C	TDH2	P00358	332 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
CDC48	YDL126C	YPT1	P01123	206 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	ATP1	P07251	545 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	NHP6A	P11632	93 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	RPL3	P14126	387 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	SPO7	P18410	259 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	STE4	P18851	423 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	YIH1	P25637	258 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	ATP11	P32453	318 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	CDC5	P32562	705 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	APT2	P36973	181 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	COS8	P38723	381 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	YJL206C	P39529	758 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	ERV46	P39727	415 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	YAT2	P40017	923 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	PHM8	P40025	321 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	IRC7	P43623	340 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	AMA1	P50082	593 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	YNL181W	P53878	407 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	YAT1	P80235	687 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	MSC1	Q03104	513 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	SPG3	Q04398	127 aa	Predicted RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	RRG8	Q06109	277 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	RRP40	Q08285	240 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	YNG1	Q08465	219 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	YBR255C-A	Q3E776	120 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	NFT1	P0CE68	1218 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	CHA1	P25379	360 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	YCR101C	P25607	182 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	PMI40	P29952	429 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	ECM25	P32525	599 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	PDR3	P33200	976 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	MRPL36	P36531	177 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	PRS2	P38620	318 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	EGD2	P38879	174 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	YEL028W	P39989	153 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	LSM4	P40070	187 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	SWM2	P40342	146 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	YIR016W	P40572	265 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	OPT1	P40897	799 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	YJL107C	P42947	387 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	RMD9	P53140	646 aa	Known RBP	4.21	□□□□□ -1.74
CDC48	YDL126C	YNR062C	P53748	327 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	DIA1	P54005	336 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	NSL1	Q12143	216 aa		4.21	□□□□□ -1.74
CDC48	YDL126C	RPL24A	P04449	155 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	RPS13	P05756	151 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	GSP1	P32835	219 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	GSP2	P32836	220 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	LIP5	P32875	414 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	SPT10	P35208	640 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	TUL1	P36096	758 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	YBR056W	P38081	501 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	FIG1	P38224	298 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	SSH1	P38353	490 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	ATM1	P40416	690 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	RPS10B	P46784	105 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	AIM22	P47051	409 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	PMT5	P52867	743 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	NBP35	P52920	328 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	SEH1	P53011	349 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	DOC1	P53068	250 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	ERV14	P53173	138 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	VOA1	P53262	265 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	CUS2	P53830	285 aa	Predicted RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	YCL001W-A	P87012	153 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	YLR283W	Q05867	314 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	MRI1	Q06489	411 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	MED7	Q08278	222 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	RPS10A	Q08745	105 aa	Predicted RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
CDC48	YDL126C	FYV7	Q12247	151 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	GTT2	Q12390	233 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	AIM45	Q12480	344 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	HIS1	P00498	297 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	GAL4	P04386	881 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	COS2	P0CX12	379 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	COS3	P0CX13	379 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
CDC48	YDL126C	RIM1	P32445	135 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	YER121W	P40076	114 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	ALG8	P40351	577 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	VPS25	P47142	202 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	YJR111C	P47148	283 aa	Known RBP	4.2	□□□□□ -1.74
CDC48	YDL126C	YGL204C	P53089	101 aa		4.2	□□□□□ -1.74
CDC48	YDL126C	NSA1	P53136	463 aa	Predicted RBP	4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 35.8 ms