RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CD40LGP29965 261 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 S100A7P31151 101 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ART3Q13508 389 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SNX1Q13596 522 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GSTA3Q16772 222 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SYCP2LQ5T4T6 812 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PRPF40BQ6NWY9 871 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 UNQ6126/PRO20091Q6UXV3 157 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CEP68Q76N32 757 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 BBS7Q8IWZ6 715 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PRMT6Q96LA8 375 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PANK2Q9BZ23 570 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SYBUQ9NX95 663 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ELOVL2Q9NXB9 296 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PRG3Q9Y2Y8 225 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PPP2R3BQ9Y5P8 575 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 STK36Q9NRP7 1315 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ZC3H4Q9UPT8 1303 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GSTA1P08263 222 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GSTA2P09210 222 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ALOX5P09917 674 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 HSPA6P17066 643 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GNL1P36915 607 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PSMC6P62333 389 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CTDSPL2Q05D32 466 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PDXDC2PQ6P474 469 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 LRRC8BQ6P9F7 803 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GIMAP6Q6P9H5 292 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 KRT77Q7Z794 578 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 METTL13Q8N6R0 699 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 EFCAB3Q8N7B9 438 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 DTX3LQ8TDB6 740 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TUBB6Q9BUF5 446 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 INTS13Q9NVM9 706 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 VAV3Q9UKW4 847 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CAPN11Q9UMQ6 739 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ARL2BPQ9Y2Y0 163 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PIEZO1Q92508 2521 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RTL1A6NKG5 1358 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 F6X3S4 739 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FOXD2O60548 495 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MYO1DO94832 1006 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SNRPA1P09661 255 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 LRPAP1P30533 357 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 DPP6P42658 865 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MAGEA9P43362 315 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CLK3P49761 638 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 OXCT1P55809 520 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGEF7Q14155 803 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CASC4Q6P4E1 433 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FAM9CQ8IZT9 166 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SYCE1Q8N0S2 351 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 OR9Q1Q8NGQ5 310 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GLT1D1Q96MS3 346 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CLCC1Q96S66 551 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM39Q9HCM9 518 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TYW1Q9NV66 732 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 NMRK1Q9NWW6 199 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RHBDL2Q9NX52 303 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PKD2L1Q9P0L9 805 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 NIP7Q9Y221 180 aaKnown RBP eCLIP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TRAF3IP3Q9Y228 551 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PCDHGB5Q9Y5G0 923 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MCM3APO60318 1980 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SMCHD1A6NHR9 2005 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 WWP2O00308 870 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MEIS2O14770 477 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 VPS4BO75351 444 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 NSFP46459 744 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ALDH7A1P49419 539 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GUCY2FP51841 1108 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CAV3P56539 151 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CTTNQ14247 550 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CFAP221Q4G0U5 840 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ZCCHC8Q6NZY4 707 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FAM180AQ6UWF9 173 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MARK2Q7KZI7 788 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CSGALNACT2Q8N6G5 542 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MARK1Q9P0L2 795 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 NENFQ9UMX5 172 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 LRRK2Q5S007 2527 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TTC21BQ7Z4L5 1316 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 DEAF1O75398 565 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RGS20O76081 388 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GNA14O95837 355 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CBSLP0DN79 551 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PCP11498 1178 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 IL2RBP14784 551 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CBSP35520 551 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 IARSP41252 1262 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 DMP1Q13316 513 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 HSDL2Q6YN16 418 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TRMT10CQ7L0Y3 403 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SPATA17Q96L03 361 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RUNDC3BQ96NL0 473 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 STK33Q9BYT3 514 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC90BQ9GZT6 254 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 EXO5Q9H790 373 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MID2Q9UJV3 735 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CCNL1Q9UK58 526 aaPredicted RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms