RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 MRPL43Q8N983 215 aaKnown RBP20.61■□□□□ 0.89
CLN3-241ENST00000635861 TCP11Q8WWU5 503 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 SH2D3AQ9BRG2 576 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 S1PR5Q9H228 398 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 BRMS1Q9HCU9 246 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 FAM105AQ9NUU6 356 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 TPCN1Q9ULQ1 816 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 HIDE1A8MVS5 230 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 ASAP2O43150 1006 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 MARCH6O60337 910 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 CSDE1O75534 798 aaKnown RBP20.61■□□□□ 0.89
CLN3-241ENST00000635861 POLGP54098 1239 aaPredicted RBP20.61■□□□□ 0.89
CLN3-241ENST00000635861 BCAR1P56945 870 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 PCBP1Q15365 356 aaKnown RBP eCLIP20.61■□□□□ 0.89
CLN3-241ENST00000635861 TPRNQ4KMQ1 711 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 PLA2G4FQ68DD2 849 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 PIK3AP1Q6ZUJ8 805 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 PSPC1Q8WXF1 523 aaKnown RBP20.61■□□□□ 0.89
CLN3-241ENST00000635861 CEP170P1Q96L14 293 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 NLRP4Q96MN2 994 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 IFT122Q9HBG6 1241 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 AGPAT5Q9NUQ2 364 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 ORC3Q9UBD5 711 aaPredicted RBP20.61■□□□□ 0.89
CLN3-241ENST00000635861 IRAK3Q9Y616 596 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 MYO10Q9HD67 2058 aa20.61■□□□□ 0.89
CLN3-241ENST00000635861 C2orf71A6NGG8 1288 aa20.6■□□□□ 0.89
CLN3-241ENST00000635861 PBX3P40426 434 aa20.6■□□□□ 0.89
CLN3-241ENST00000635861 HFE2Q6ZVN8 426 aa20.6■□□□□ 0.89
CLN3-241ENST00000635861 HAS1Q92839 578 aa20.6■□□□□ 0.89
CLN3-241ENST00000635861 NECTIN4Q96NY8 510 aa20.6■□□□□ 0.89
CLN3-241ENST00000635861 LXNQ9BS40 222 aa20.6■□□□□ 0.89
CLN3-241ENST00000635861 ZSWIM4Q9H7M6 989 aa20.6■□□□□ 0.89
CLN3-241ENST00000635861 CNTNAP2Q9UHC6 1331 aa20.59■□□□□ 0.89
CLN3-241ENST00000635861 YWHABP31946 246 aaKnown RBP20.59■□□□□ 0.89
CLN3-241ENST00000635861 KRT2P35908 639 aa20.59■□□□□ 0.89
CLN3-241ENST00000635861 RBM10P98175 930 aaKnown RBP20.59■□□□□ 0.89
CLN3-241ENST00000635861 ITIH3Q06033 890 aa20.59■□□□□ 0.89
CLN3-241ENST00000635861 NOMO2Q5JPE7 1267 aa20.59■□□□□ 0.89
CLN3-241ENST00000635861 SYCE2Q6PIF2 218 aa20.59■□□□□ 0.89
CLN3-241ENST00000635861 TRIM67Q6ZTA4 783 aa20.59■□□□□ 0.89
CLN3-241ENST00000635861 KMT2EQ8IZD2 1858 aa20.58■□□□□ 0.89
CLN3-241ENST00000635861 ZC3H11AO75152 810 aaKnown RBP eCLIP20.58■□□□□ 0.88
CLN3-241ENST00000635861 CTDNEP1O95476 244 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 AK2P54819 239 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 NPEPPSP55786 919 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 ZXDAP98168 799 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 SPIRE1Q08AE8 756 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 CES5AQ6NT32 575 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 DDX53Q86TM3 631 aaKnown RBP20.58■□□□□ 0.88
CLN3-241ENST00000635861 POTEDQ86YR6 584 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 KSR1Q8IVT5 923 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 CNNM3Q8NE01 707 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 OXER1Q8TDS5 423 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 RPGRIP1Q96KN7 1286 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 ZBP1Q9H171 429 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 TBC1D13Q9NVG8 400 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 KANSL3Q9P2N6 904 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 HCFC2Q9Y5Z7 792 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 ZDBF2Q9HCK1 2354 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 DENND4AQ7Z401 1863 aa20.58■□□□□ 0.88
CLN3-241ENST00000635861 OFD1O75665 1012 aa20.57■□□□□ 0.88
CLN3-241ENST00000635861 RNASELQ05823 741 aaKnown RBP20.57■□□□□ 0.88
CLN3-241ENST00000635861 MRPL10Q7Z7H8 261 aaKnown RBP20.57■□□□□ 0.88
CLN3-241ENST00000635861 URGCPQ8TCY9 931 aa20.57■□□□□ 0.88
CLN3-241ENST00000635861 PRPF31Q8WWY3 499 aaKnown RBP20.57■□□□□ 0.88
CLN3-241ENST00000635861 IGSF21Q96ID5 467 aa20.57■□□□□ 0.88
CLN3-241ENST00000635861 NRDE2Q9H7Z3 1164 aa20.57■□□□□ 0.88
CLN3-241ENST00000635861 DZANK1Q9NVP4 752 aa20.57■□□□□ 0.88
CLN3-241ENST00000635861 WRAP73Q9P2S5 460 aaPredicted RBP20.57■□□□□ 0.88
CLN3-241ENST00000635861 NR2E1Q9Y466 385 aa20.57■□□□□ 0.88
CLN3-241ENST00000635861 PCDHB2Q9Y5E7 798 aa20.57■□□□□ 0.88
CLN3-241ENST00000635861 GALTP07902 379 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 CTSAP10619 480 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 LAMTOR4Q0VGL1 99 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 MXD4Q14582 209 aaPredicted RBP20.56■□□□□ 0.88
CLN3-241ENST00000635861 EMC2Q15006 297 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 NCAPH2Q6IBW4 605 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 LLGL2Q6P1M3 1020 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 FERMT3Q86UX7 667 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 VPS52Q8N1B4 723 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 TNFRSF25Q93038 417 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 LPPQ93052 612 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 GTF3C6Q969F1 213 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 MTRQ99707 1265 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 PRRX2Q99811 253 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 UBN1Q9NPG3 1134 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 GJB4Q9NTQ9 266 aa20.56■□□□□ 0.88
CLN3-241ENST00000635861 TMEM221A6NGB7 291 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 NT5C1B-RDH14C9J2C7 533 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 M0R296 226 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 CLASP2O75122 1294 aaKnown RBP20.55■□□□□ 0.88
CLN3-241ENST00000635861 LYPLA2O95372 231 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 CXCL14O95715 111 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 AXLP30530 894 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 POU5F1BQ06416 359 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 SIGLEC14Q08ET2 396 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 XKR9Q5GH70 373 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 PPFIBP1Q86W92 1011 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 TMEM143Q96AN5 459 aa20.55■□□□□ 0.88
CLN3-241ENST00000635861 CCDC51Q96ER9 411 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms