RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 MXD4Q14582 209 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-219ENST00000620786 ANGPTL8Q6UXH0 198 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 C11orf70Q9BRQ4 267 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SLC7A5P2Q9GIP4 190 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 RASSF4Q9H2L5 321 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 SEL1LQ9UBV2 794 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 MID2Q9UJV3 735 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 RFX7Q2KHR2 1363 aa12.16□□□□□ -0.46
CLIP1-219ENST00000620786 EXOC1LA0A1B0GW35 172 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 ENTPD3O75355 529 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 CD2BP2O95400 341 aaKnown RBP12.15□□□□□ -0.46
CLIP1-219ENST00000620786 EPHA7Q15375 998 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 CCDC38Q502W7 563 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 TAF1BQ53T94 588 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-219ENST00000620786 EFHC2Q5JST6 749 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 TTC19Q6DKK2 380 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-219ENST00000620786 VSTM4Q8IW00 320 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 TTC39CQ8N584 583 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 GBP7Q8N8V2 638 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-219ENST00000620786 SPATA17Q96L03 361 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 EDEM3Q9BZQ6 932 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 USH1CQ9Y6N9 552 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 PNPLA7Q6ZV29 1317 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 F5H423 210 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-219ENST00000620786 ZMYND10O75800 440 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 NDUFA10O95299 355 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 FCGRTP55899 365 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 PSMC1P62191 440 aaKnown RBP12.15□□□□□ -0.46
CLIP1-219ENST00000620786 GPRC5AQ8NFJ5 357 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 DDX50Q9BQ39 737 aaKnown RBP12.15□□□□□ -0.46
CLIP1-219ENST00000620786 SPON2Q9BUD6 331 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 SMARCAD1Q9H4L7 1026 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 EPHB4P54760 987 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 CYBBP04839 570 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 CDC42EP1Q00587 391 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 SLC15A2Q16348 729 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 IER5Q5VY09 327 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 ZNF467Q7Z7K2 595 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-219ENST00000620786 PDIK1LQ8N165 341 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 ADAMTS1Q9UHI8 967 aa12.15□□□□□ -0.46
CLIP1-219ENST00000620786 RPS12P25398 132 aaKnown RBP12.15□□□□□ -0.47
CLIP1-219ENST00000620786 CASP1P29466 404 aa12.15□□□□□ -0.47
CLIP1-219ENST00000620786 SLCO1A2P46721 670 aa12.15□□□□□ -0.47
CLIP1-219ENST00000620786 DHX9Q08211 1270 aaKnown RBP12.15□□□□□ -0.47
CLIP1-219ENST00000620786 SZRD1Q7Z422 152 aa12.15□□□□□ -0.47
CLIP1-219ENST00000620786 SARS2Q9NP81 518 aaKnown RBP12.15□□□□□ -0.47
CLIP1-219ENST00000620786 IQANK1A0A1B0GTG1 560 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 AP3M2P53677 418 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 AP1B1Q10567 949 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 TFDP2Q14188 446 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 SNX19Q92543 992 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 TRIM62Q9BVG3 475 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 PLA2G12BQ9BX93 195 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 PVALEFA0A1B0GWK0 134 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 KIF3CO14782 793 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 SESN3P58005 492 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 GPC5P78333 572 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 SAMD7Q7Z3H4 446 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 ZNF579Q8NAF0 562 aaKnown RBP12.14□□□□□ -0.47
CLIP1-219ENST00000620786 TACO1Q9BSH4 297 aaKnown RBP12.14□□□□□ -0.47
CLIP1-219ENST00000620786 HEMGNQ9BXL5 484 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 SIK2Q9H0K1 926 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 DNAJC17Q9NVM6 304 aaKnown RBP12.14□□□□□ -0.47
CLIP1-219ENST00000620786 PCSK1NQ9UHG2 260 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 G3BP2Q9UN86 482 aaKnown RBP12.14□□□□□ -0.47
CLIP1-219ENST00000620786 ORC6Q9Y5N6 252 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 IQSEC2Q5JU85 1478 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 SSTR3P32745 418 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-219ENST00000620786 RAD51Q06609 339 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 TMEM62Q0P6H9 643 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 KCNH2Q12809 1159 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 SF3B3Q15393 1217 aaKnown RBP12.14□□□□□ -0.47
CLIP1-219ENST00000620786 HHIPL2Q6UWX4 724 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 TADA2BQ86TJ2 420 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 ZNF34Q8IZ26 560 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 NUDT12Q9BQG2 462 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 TUFT1Q9NNX1 390 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 ARHGEF40Q8TER5 1519 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 DFFAO00273 331 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 SLC25A27O95847 323 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 KRT39Q6A163 491 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 Q9H521 79 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 RNF14Q9UBS8 474 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 TJP2Q9UDY2 1190 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 PFASO15067 1338 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 ZNF521Q96K83 1311 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 USP31Q70CQ4 1352 aa12.14□□□□□ -0.47
CLIP1-219ENST00000620786 HSPA8P11142 646 aaKnown RBP12.13□□□□□ -0.47
CLIP1-219ENST00000620786 DUOXA2Q1HG44 320 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 CEP55Q53EZ4 464 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 EXOC4Q96A65 974 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 PANX2Q96RD6 677 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 SYNDIG1Q9H7V2 258 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 MTMR4Q9NYA4 1195 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 CAMSAP1Q5T5Y3 1602 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 E5RI56 91 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 RPS6KA5O75582 802 aa12.13□□□□□ -0.47
CLIP1-219ENST00000620786 ZKSCAN8Q15776 578 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-219ENST00000620786 HABP4Q5JVS0 413 aaKnown RBP12.13□□□□□ -0.47
CLIP1-219ENST00000620786 APPL2Q8NEU8 664 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms