RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 FERMT3Q86UX7 667 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 HELQQ8TDG4 1101 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 PGBD4Q96DM1 585 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 AGPAT5Q9NUQ2 364 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 FAM105AQ9NUU6 356 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 HCSTQ9UBK5 93 aa21.27■■□□□ 1
CCDC28A-203ENST00000617445 PI4K2BG5E9Z4 385 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 TBX10O75333 385 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 DGAT1O75907 488 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 EYA4O95677 639 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 SRGAP2CP0DJJ0 459 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 SSTR3P32745 418 aaPredicted RBP21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 ALDH7A1P49419 539 aaKnown RBP21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 FOSBP53539 338 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 COASYQ13057 564 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 GLB1LQ6UWU2 654 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 ADHFE1Q8IWW8 467 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 POP1Q99575 1024 aaKnown RBP21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 CD320Q9NPF0 282 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 ARID2Q68CP9 1835 aa21.26■□□□□ 0.99
CCDC28A-203ENST00000617445 LINC01565O15544 149 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 MBTPS2O43462 519 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 RBM25P49756 843 aaKnown RBP21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 ERVFC1P60507 584 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 TFDP1Q14186 410 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 BMS1Q14692 1282 aaKnown RBP21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 C8orf34Q49A92 452 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 RBM23Q86U06 439 aaKnown RBP21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 FAM184AQ8NB25 1140 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 RNF149Q8NC42 400 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 FBXO18Q8NFZ0 1043 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 MSLNLQ96KJ4 702 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 CCDC43Q96MW1 224 aaKnown RBP21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 KIF2CQ99661 725 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 EPHX3Q9H6B9 360 aa21.25■□□□□ 0.99
CCDC28A-203ENST00000617445 C19orf67A6NJJ6 358 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 ZBTB39O15060 712 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 SRGAP2BP0DMP2 458 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 ALADP13716 330 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 AXLP30530 894 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 MCM7P33993 719 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 ZP2Q05996 745 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 NCBP1Q09161 790 aaKnown RBP21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 DUSP6Q16828 381 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 SLC39A11Q8N1S5 342 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 TUFT1Q9NNX1 390 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 CLEC1BQ9P126 229 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 PCDHB2Q9Y5E7 798 aa21.24■□□□□ 0.99
CCDC28A-203ENST00000617445 WNT7AO00755 349 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 TRAPPC10P48553 1259 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 PTENP60484 403 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 GUCY1B3Q02153 619 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 NOMO2Q5JPE7 1267 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 TMEM184AQ6ZMB5 413 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 MRPL10Q7Z7H8 261 aaKnown RBP21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 IFNLR1Q8IU57 520 aaPredicted RBP21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 SMRP1Q8NCR6 262 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 CNNM3Q8NE01 707 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 CCDC51Q96ER9 411 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 TCF25Q9BQ70 676 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 TMEM60Q9H2L4 133 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 ENTPD7Q9NQZ7 604 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 KANSL3Q9P2N6 904 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 CNTNAP2Q9UHC6 1331 aa21.23■□□□□ 0.99
CCDC28A-203ENST00000617445 GPR37L1O60883 481 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 ERLIN2O94905 339 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 ATP2B1P20020 1258 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 COL9A1P20849 921 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 HOXA11P31270 313 aaPredicted RBP21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 RARRES1P49788 294 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 BCAR1P56945 870 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 GNL2Q13823 731 aaKnown RBP21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 CLUL1Q15846 466 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 TMC7Q7Z402 723 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 ERMNQ8TAM6 284 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 NFKBIZQ9BYH8 718 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 MINDY3Q9H8M7 445 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 UBN1Q9NPG3 1134 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 XPNPEP1Q9NQW7 623 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 STK39Q9UEW8 545 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 PCDHGC5Q9Y5F6 944 aa21.22■□□□□ 0.99
CCDC28A-203ENST00000617445 PER2O15055 1255 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 OFD1O75665 1012 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 GLP2RO95838 553 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 ARL2P36404 184 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 RNASELQ05823 741 aaKnown RBP21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 RABEP1Q15276 862 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 TMEM31Q5JXX7 168 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 PLPP4Q5VZY2 271 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 NOSTRINQ8IVI9 506 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 URGCPQ8TCY9 931 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 LPPQ93052 612 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 TMEM169Q96HH4 297 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 NACC1Q96RE7 527 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 POLR3CQ9BUI4 534 aaPredicted RBP21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 BMP2KQ9NSY1 1161 aaPredicted RBP21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 TBC1D13Q9NVG8 400 aa21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 DBR1Q9UK59 544 aaKnown RBP21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 NOL7Q9UMY1 257 aaKnown RBP21.21■□□□□ 0.99
CCDC28A-203ENST00000617445 KIF3AQ9Y496 699 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms