RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 EPS15L1Q9UBC2 864 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 ZHX2Q9Y6X8 837 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 OVOS2A0A0J9YW53 1432 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 OVOS2Q6IE36 1432 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 PPP1R37O75864 691 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 DCTN3O75935 186 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 STXBP2Q15833 593 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 SLC27A3Q5K4L6 730 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 ICE2Q659A1 982 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 ARMCX2Q7L311 632 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 TTC13Q8NBP0 860 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 FBXL13Q8NEE6 735 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 PDZD8Q8NEN9 1154 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 DEPDC1BQ8WUY9 529 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 HVCN1Q96D96 273 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 SPDL1Q96EA4 605 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 CYTH2Q99418 400 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 KLC2Q9H0B6 622 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 DCTN4Q9UJW0 460 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 TTC4O95801 387 aa14.96□□□□□ -0.02
CPSF1-212ENST00000616140 UCHL3P15374 230 aa14.96□□□□□ -0.02
CPSF1-212ENST00000616140 SF3B3Q15393 1217 aaKnown RBP14.96□□□□□ -0.02
CPSF1-212ENST00000616140 ATG16L1Q676U5 607 aa14.96□□□□□ -0.02
CPSF1-212ENST00000616140 WDR75Q8IWA0 830 aaKnown RBP14.96□□□□□ -0.02
CPSF1-212ENST00000616140 BBS5Q8N3I7 341 aa14.96□□□□□ -0.02
CPSF1-212ENST00000616140 DDX27Q96GQ7 796 aaKnown RBP14.96□□□□□ -0.02
CPSF1-212ENST00000616140 ZNF668Q96K58 619 aaPredicted RBP14.96□□□□□ -0.02
CPSF1-212ENST00000616140 SMARCAL1Q9NZC9 954 aa14.96□□□□□ -0.02
CPSF1-212ENST00000616140 FEM1BQ9UK73 627 aa14.96□□□□□ -0.02
CPSF1-212ENST00000616140 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.96□□□□□ -0.02
CPSF1-212ENST00000616140 CROCC2H7BZ55 1655 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 CTIFO43310 598 aaKnown RBP14.95□□□□□ -0.02
CPSF1-212ENST00000616140 ADRA2BP18089 450 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 SATB1Q01826 763 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 CAV1Q03135 178 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 CATSPER4Q7RTX7 472 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 ATP6V1E2Q96A05 226 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 PFASO15067 1338 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 TTC36A6NLP5 189 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 CLGNO14967 610 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 GYG2O15488 501 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 KRT3P12035 628 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 GALCP54803 685 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 SH3BGRP55822 239 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-212ENST00000616140 GPS1Q13098 491 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 THOC5Q13769 683 aaKnown RBP14.95□□□□□ -0.02
CPSF1-212ENST00000616140 ZNF568Q3ZCX4 644 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 CCNI2Q6ZMN8 369 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-212ENST00000616140 PSPC1Q8WXF1 523 aaKnown RBP14.95□□□□□ -0.02
CPSF1-212ENST00000616140 CHMP6Q96FZ7 201 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 NUDCD1Q96RS6 583 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 SCOCQ9UIL1 159 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 DAGLAQ9Y4D2 1042 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 KRT38O76015 456 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 CALB1P05937 261 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 MX2P20592 715 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 GNA15P30679 374 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 PSMC5P62195 406 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 TROAPQ12815 778 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 NFX1Q12986 1120 aaKnown RBP14.95□□□□□ -0.02
CPSF1-212ENST00000616140 CRLF3Q8IUI8 442 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 SDCCAG3Q96C92 435 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 TRIM4Q9C037 500 aa14.95□□□□□ -0.02
CPSF1-212ENST00000616140 PTPRMP28827 1452 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 GOLGA8QA0A0J9YX86 632 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 GOLGA8OA6NCC3 632 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 GOLGA8NF8WBI6 632 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 ACTN3Q08043 901 aaPredicted RBP14.94□□□□□ -0.02
CPSF1-212ENST00000616140 GPR162Q16538 588 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 NBPF9Q3BBW0 867 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 AP5M1Q9H0R1 490 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 PTPRUQ92729 1446 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 UBE4BO95155 1302 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 NCOA3Q9Y6Q9 1424 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 CYP26A1O43174 497 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 OSBPP22059 807 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 SFNP31947 248 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 EPHA7Q15375 998 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 HSP90AA5PQ58FG0 334 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 RHOT1Q8IXI2 618 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 PPM1NQ8N819 430 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 WRNIP1Q96S55 665 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 WNT8AQ9H1J5 351 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 CPS1P31327 1500 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 PLEKHG2Q9H7P9 1386 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 PXDNLA1KZ92 1463 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 FLT1P17948 1338 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 NR1H3Q13133 447 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 CYFIP1Q7L576 1253 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 ABI1Q8IZP0 508 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 LRRC37BQ96QE4 947 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 TFR2Q9UP52 801 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 E9PCH4 1651 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 TTI1O43156 1089 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 TRPA1O75762 1119 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 KRT14P02533 472 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 RFX1P22670 979 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 GRAMD1BQ3KR37 738 aa14.94□□□□□ -0.02
CPSF1-212ENST00000616140 LMBRD2Q68DH5 695 aaPredicted RBP14.94□□□□□ -0.02
CPSF1-212ENST00000616140 RSPH3Q86UC2 560 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms