RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 NAMPTP43490 491 aa21.42■■□□□ 1.02
UPF1-212ENST00000601689 PAN2Q504Q3 1202 aaKnown RBP21.42■■□□□ 1.02
UPF1-212ENST00000601689 EPC2Q52LR7 807 aa21.42■■□□□ 1.02
UPF1-212ENST00000601689 PHLPP2Q6ZVD8 1323 aa21.42■■□□□ 1.02
UPF1-212ENST00000601689 ASAP3Q8TDY4 903 aa21.42■■□□□ 1.02
UPF1-212ENST00000601689 CCDC51Q96ER9 411 aa21.42■■□□□ 1.02
UPF1-212ENST00000601689 MMTAG2Q9BU76 263 aaKnown RBP21.42■■□□□ 1.02
UPF1-212ENST00000601689 PLVAPQ9BX97 442 aa21.42■■□□□ 1.02
UPF1-212ENST00000601689 TRIM6Q9C030 488 aaPredicted RBP21.42■■□□□ 1.02
UPF1-212ENST00000601689 TMEM117Q9H0C3 514 aa21.42■■□□□ 1.02
UPF1-212ENST00000601689 C17orf75Q9HAS0 396 aa21.42■■□□□ 1.02
UPF1-212ENST00000601689 PRMT7Q9NVM4 692 aaPredicted RBP21.42■■□□□ 1.02
UPF1-212ENST00000601689 LMCD1Q9NZU5 365 aa21.42■■□□□ 1.02
UPF1-212ENST00000601689 SRPRBQ9Y5M8 271 aaKnown RBP21.42■■□□□ 1.02
UPF1-212ENST00000601689 DMP1Q13316 513 aaPredicted RBP21.41■■□□□ 1.02
UPF1-212ENST00000601689 MAPK6Q16659 721 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 ATL3Q6DD88 541 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 FAM173BQ6P4H8 233 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 SYT2Q8N9I0 419 aaPredicted RBP21.41■■□□□ 1.02
UPF1-212ENST00000601689 KRI1Q8N9T8 703 aaKnown RBP21.41■■□□□ 1.02
UPF1-212ENST00000601689 PRIMPOLQ96LW4 560 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 C17orf80Q9BSJ5 609 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 C11orf84Q9BUA3 381 aaPredicted RBP21.41■■□□□ 1.02
UPF1-212ENST00000601689 MRPL9Q9BYD2 267 aaKnown RBP21.41■■□□□ 1.02
UPF1-212ENST00000601689 GPRC5CQ9NQ84 441 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 FAM105AQ9NUU6 356 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 CFAP45Q9UL16 551 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 PCDHB12Q9Y5F1 795 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 MYH15Q9Y2K3 1946 aa21.41■■□□□ 1.02
UPF1-212ENST00000601689 MYH11P35749 1972 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 CARNS1A5YM72 827 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 F13A1P00488 732 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 BMPR1AP36894 532 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 EFNA5P52803 228 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 SLC39A14Q15043 492 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 PTPAQ15257 358 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 CSPP1Q1MSJ5 1256 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 NAALADL2Q58DX5 795 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 FOXD4L5Q5VV16 416 aaPredicted RBP21.4■■□□□ 1.02
UPF1-212ENST00000601689 CRIPAKQ8N1N5 446 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 FOXD4L4Q8WXT5 416 aaPredicted RBP21.4■■□□□ 1.02
UPF1-212ENST00000601689 USP28Q96RU2 1077 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 PLIN2Q99541 437 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 CCSER1Q9C0I3 900 aa21.4■■□□□ 1.02
UPF1-212ENST00000601689 MORC2Q9Y6X9 1032 aaPredicted RBP21.4■■□□□ 1.02
UPF1-212ENST00000601689 FNDC1Q4ZHG4 1894 aaPredicted RBP21.4■■□□□ 1.02
UPF1-212ENST00000601689 ARHGEF15O94989 841 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 PLA2G4BP0C869 781 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 SMTNP53814 917 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 GPM6BQ13491 265 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 RINT1Q6NUQ1 792 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 APBB1IPQ7Z5R6 666 aaPredicted RBP21.39■■□□□ 1.01
UPF1-212ENST00000601689 MICALL1Q8N3F8 863 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 CLP1Q92989 425 aaKnown RBP21.39■■□□□ 1.01
UPF1-212ENST00000601689 CSRNP2Q9H175 543 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 MINDY3Q9H8M7 445 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 RC3H2Q9HBD1 1191 aaKnown RBP21.39■■□□□ 1.01
UPF1-212ENST00000601689 UBN1Q9NPG3 1134 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 ATP6V1DQ9Y5K8 247 aa21.39■■□□□ 1.01
UPF1-212ENST00000601689 CCDC169A6NNP5 214 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 H3BNC9 293 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 RFXAPO00287 272 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 ZNF623O75123 536 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 YEATS4O95619 227 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 KRT18P05783 430 aaKnown RBP21.38■■□□□ 1.01
UPF1-212ENST00000601689 POU3F3P20264 500 aaPredicted RBP21.38■■□□□ 1.01
UPF1-212ENST00000601689 GUCY2CP25092 1073 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 MBTD1Q05BQ5 628 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 GRB10Q13322 594 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 TMEM119Q4V9L6 283 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 GLB1LQ6UWU2 654 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 LRRC43Q8N309 656 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 PPM1EQ8WY54 764 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 PNMA5Q96PV4 448 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 ADPGKQ9BRR6 497 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 RBM19Q9Y4C8 960 aaKnown RBP21.38■■□□□ 1.01
UPF1-212ENST00000601689 PCDHB2Q9Y5E7 798 aa21.38■■□□□ 1.01
UPF1-212ENST00000601689 CDH23Q9H251 3354 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 C5orf67F2Z3F1 127 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 K7ERI5 159 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 SPTLC2O15270 562 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 TSPAN1O60635 241 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 HIP1RO75146 1068 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 PPP6R2O75170 966 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 FGFR1P11362 822 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 LAG3P18627 525 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 NASPP49321 788 aaPredicted RBP21.37■■□□□ 1.01
UPF1-212ENST00000601689 CDCA2Q69YH5 1023 aaPredicted RBP21.37■■□□□ 1.01
UPF1-212ENST00000601689 CCDC73Q6ZRK6 1079 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 C1orf186Q6ZWK4 172 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 URGCPQ8TCY9 931 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 GDPD5Q8WTR4 605 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 P2RX5Q93086 422 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 LMAN2LQ9H0V9 348 aa21.37■■□□□ 1.01
UPF1-212ENST00000601689 LARSQ9P2J5 1176 aaKnown RBP21.37■■□□□ 1.01
UPF1-212ENST00000601689 FBXO2Q9UK22 296 aaPredicted RBP21.37■■□□□ 1.01
UPF1-212ENST00000601689 MRPL42Q9Y6G3 142 aaKnown RBP21.37■■□□□ 1.01
UPF1-212ENST00000601689 CNTNAP2Q9UHC6 1331 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 H0YCG3 227 aa21.36■■□□□ 1.01
UPF1-212ENST00000601689 LIG1P18858 919 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms