RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 BAG4O95429 457 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 P4HBP07237 508 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 AK2P54819 239 aa19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 BMS1Q14692 1282 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 XKR9Q5GH70 373 aa19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 EARS2Q5JPH6 523 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 SYCE2Q6PIF2 218 aa19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 ALYREFQ86V81 257 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 FAM177A1Q8N128 213 aaPredicted RBP19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 HAS1Q92839 578 aa19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 PBXIP1Q96AQ6 731 aa19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 MFSD14AQ96MC6 490 aa19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 LXNQ9BS40 222 aa19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 KCNMB3Q9NPA1 279 aa19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 FAM105AQ9NUU6 356 aa19.67■□□□□ 0.74
SHKBP1-223ENST00000600552 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 TMEM221A6NGB7 291 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 C2orf71A6NGG8 1288 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 M0R296 226 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 ZBTB39O15060 712 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 CLASP2O75122 1294 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 CTDNEP1O95476 244 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 WEE2P0C1S8 567 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 SKIP12755 728 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 GCFC2P16383 781 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 NR5A1Q13285 461 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 CBX2Q14781 532 aaPredicted RBP19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 EPHA7Q15375 998 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 NOMO2Q5JPE7 1267 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 PPP4R3AQ6IN85 833 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 TRIM67Q6ZTA4 783 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 TPH2Q8IWU9 490 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 VPS52Q8N1B4 723 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 MRPL43Q8N983 215 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 S1PR5Q9H228 398 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 TBC1D13Q9NVG8 400 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 PCDHB2Q9Y5E7 798 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 STK36Q9NRP7 1315 aa19.66■□□□□ 0.74
SHKBP1-223ENST00000600552 SSBP05455 408 aaKnown RBP eCLIP19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 HOXD11P31277 338 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 YWHABP31946 246 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 KRT2P35908 639 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 ZXDAP98168 799 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 LAMTOR4Q0VGL1 99 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 OTUD6AQ7L8S5 288 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 TMEM173Q86WV6 379 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 C12orf76Q8N812 135 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 PSPC1Q8WXF1 523 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 SUSD6Q92537 303 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 WASF1Q92558 559 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 CASP10Q92851 521 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 PGBD4Q96DM1 585 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 FBXL18Q96ME1 805 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 NAP1L4Q99733 375 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 NRDE2Q9H7Z3 1164 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 MINDY3Q9H8M7 445 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 BRMS1Q9HCU9 246 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 DNAJB4Q9UDY4 337 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 TECTAO75443 2155 aa19.65■□□□□ 0.74
SHKBP1-223ENST00000600552 OFD1O75665 1012 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 RFC5P40937 340 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 EMC2Q15006 297 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 ANKRD1Q15327 319 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 TPRNQ4KMQ1 711 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 RARS2Q5T160 578 aaKnown RBP19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 CES5AQ6NT32 575 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 KANK3Q6NY19 840 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 TMEM184AQ6ZMB5 413 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 RNF149Q8NC42 400 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 URGCPQ8TCY9 931 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 FAM193BQ96PV7 902 aaPredicted RBP19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 IFT122Q9HBG6 1241 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 HCFC2Q9Y5Z7 792 aa19.64■□□□□ 0.73
SHKBP1-223ENST00000600552 A0A087WWV3 80 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 SPDYE4A6NLX3 237 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 LARGE1O95461 756 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 GALTP07902 379 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 HOXB8P17481 243 aaPredicted RBP19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 ATP2B1P20020 1258 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 SLC11A1P49279 550 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 RAB27AP51159 221 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 KCNC3Q14003 757 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 ZNF280BQ86YH2 543 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 EXOC8Q8IYI6 725 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 BCL7CQ8WUZ0 217 aaPredicted RBP19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 IGSF21Q96ID5 467 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 CCDC43Q96MW1 224 aaKnown RBP19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 ZSWIM4Q9H7M6 989 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 AGPAT5Q9NUQ2 364 aa19.63■□□□□ 0.73
SHKBP1-223ENST00000600552 TBX3O15119 743 aa19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 POMCP01189 267 aa19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 FDPSP14324 419 aaKnown RBP19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 ME3Q16798 604 aa19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 SRGAP1Q7Z6B7 1085 aa19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 C4orf19Q8IY42 314 aa19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 SLFN12Q8IYM2 578 aa19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 TCP11Q8WWU5 503 aa19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 MTRQ99707 1265 aa19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 APOL6Q9BWW8 343 aa19.62■□□□□ 0.73
SHKBP1-223ENST00000600552 DHX33Q9H6R0 707 aaKnown RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms