RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 DOCK5Q9H7D0 1870 aa10.51□□□□□ -0.73
TRIM28-208ENST00000597172 CEP295Q9C0D2 2601 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 TMEM150BA6NC51 233 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 NOP56O00567 594 aaKnown RBP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 KINO60870 393 aaKnown RBP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 PPFIA4O75335 1185 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 EYA4O95677 639 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 MMP3P08254 477 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 PRR29P0C7W0 189 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 PLA2G4BP0C869 781 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 XRCC6P12956 609 aaKnown RBP eCLIP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 CASP1P29466 404 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 AFMP43652 599 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 STAT5BP51692 787 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 SLC12A3P55017 1021 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 MKRN4PQ13434 485 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 CBX2Q14781 532 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 ARSHQ5FYA8 562 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 UTP14CQ5TAP6 766 aaKnown RBP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 PLPPR4Q7Z2D5 763 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 TLK2Q86UE8 772 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 KCTD17Q8N5Z5 321 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 SYT2Q8N9I0 419 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 LARP4BQ92615 738 aaKnown RBP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 ERCC4Q92889 916 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 RIPOR3Q96MK2 946 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 NACC1Q96RE7 527 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 C16orf70Q9BSU1 422 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 AP5M1Q9H0R1 490 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 CUEDC2Q9H467 287 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 STK17AQ9UEE5 414 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 CD207Q9UJ71 328 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 IGSF9BQ9UPX0 1349 aa10.5□□□□□ -0.73
TRIM28-208ENST00000597172 TRIP12Q14669 1992 aaPredicted RBP10.5□□□□□ -0.73
TRIM28-208ENST00000597172 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.49□□□□□ -0.73
TRIM28-208ENST00000597172 MYMKA6NI61 221 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 PITPNM1O00562 1244 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 BACH1O14867 736 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 LGALS2P05162 132 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 HOXB3P14651 431 aaPredicted RBP10.49□□□□□ -0.73
TRIM28-208ENST00000597172 YWHABP31946 246 aaKnown RBP10.49□□□□□ -0.73
TRIM28-208ENST00000597172 GPM6BQ13491 265 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 PNOCQ13519 176 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 CUL4BQ13620 913 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 DHX8Q14562 1220 aaKnown RBP10.49□□□□□ -0.73
TRIM28-208ENST00000597172 EPC2Q52LR7 807 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 CCDC183Q5T5S1 534 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 FAM160B1Q5W0V3 765 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 KANK3Q6NY19 840 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 FAM117BQ6P1L5 589 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 RBM43Q6ZSC3 357 aaKnown RBP10.49□□□□□ -0.73
TRIM28-208ENST00000597172 ANO5Q75V66 913 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 SV2BQ7L1I2 683 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 TRMT1LQ7Z2T5 733 aaKnown RBP10.49□□□□□ -0.73
TRIM28-208ENST00000597172 TRIM50Q86XT4 487 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 CEP57L1Q8IYX8 460 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 ATP6V0A1Q93050 837 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 CEP89Q96ST8 783 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 C7orf25Q9BPX7 421 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 NUP62CLQ9H1M0 184 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 BHMT2Q9H2M3 363 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 TNMDQ9H2S6 317 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 RNPEPQ9H4A4 650 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 SMARCAD1Q9H4L7 1026 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 ANKEF1Q9NU02 776 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 DBR1Q9UK59 544 aaKnown RBP10.49□□□□□ -0.73
TRIM28-208ENST00000597172 MYO10Q9HD67 2058 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 EMSYQ7Z589 1322 aa10.49□□□□□ -0.73
TRIM28-208ENST00000597172 NPHP3-ACAD11A0A0J9YXS1 232 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 H3BNC9 293 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 DKC1O60832 514 aaKnown RBP eCLIP10.48□□□□□ -0.73
TRIM28-208ENST00000597172 CYP11B2P19099 503 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 SARSP49591 514 aaKnown RBP10.48□□□□□ -0.73
TRIM28-208ENST00000597172 RARRES1P49788 294 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 NPEPPSP55786 919 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 PRKCEQ02156 737 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 DPYDQ12882 1025 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 PLCB4Q15147 1175 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 DGKDQ16760 1214 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 XKR3Q5GH77 459 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 RINT1Q6NUQ1 792 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 C1orf186Q6ZWK4 172 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 CKAP2LQ8IYA6 745 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 TMEM105Q8N8V8 129 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 SPATA20Q8TB22 786 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 KAT2BQ92831 832 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 GLG1Q92896 1179 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 SAMD11Q96NU1 681 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 SH2D3AQ9BRG2 576 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 NIFKQ9BYG3 293 aaKnown RBP10.48□□□□□ -0.73
TRIM28-208ENST00000597172 BLZF1Q9H2G9 400 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 AZI2Q9H6S1 392 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 MAGEF1Q9HAY2 307 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 INSL6Q9Y581 213 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 PCDHA5Q9Y5H7 936 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 FRYLO94915 3013 aa10.48□□□□□ -0.73
TRIM28-208ENST00000597172 ZBTB42B2RXF5 422 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 KLRC4O43908 158 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 OATP04181 439 aa10.47□□□□□ -0.73
TRIM28-208ENST00000597172 SSBP05455 408 aaKnown RBP eCLIP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms