RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 EDN1P05305 212 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 ZSCAN20P17040 1043 aaPredicted RBP11.71□□□□□ -0.53
LIG1-213ENST00000596672 XBP1P17861 261 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 GLRA2P23416 452 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 MCM7P33993 719 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 ARL2P36404 184 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 RARRES1P49788 294 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 CAPSQ13938 189 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 ZNF174Q15697 407 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 SMAD2Q15796 467 aaKnown RBP11.71□□□□□ -0.53
LIG1-213ENST00000596672 IL17AQ16552 155 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 DUSP6Q16828 381 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 ODR4Q5SWX8 454 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 SPOUT1Q5T280 376 aaKnown RBP11.71□□□□□ -0.53
LIG1-213ENST00000596672 KANK3Q6NY19 840 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 MRPL10Q7Z7H8 261 aaKnown RBP11.71□□□□□ -0.53
LIG1-213ENST00000596672 CATSPER3Q86XQ3 398 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 THNSL1Q8IYQ7 743 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 SMG8Q8ND04 991 aaKnown RBP11.71□□□□□ -0.53
LIG1-213ENST00000596672 FBXO18Q8NFZ0 1043 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 AUTS2Q8WXX7 1259 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 MRPS27Q92552 414 aaKnown RBP11.71□□□□□ -0.53
LIG1-213ENST00000596672 SCLT1Q96NL6 688 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 EIF2AQ9BY44 585 aaKnown RBP11.71□□□□□ -0.53
LIG1-213ENST00000596672 CXCL16Q9H2A7 254 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 ZSWIM4Q9H7M6 989 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 NRDE2Q9H7Z3 1164 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 POLD4Q9HCU8 107 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 GPRC5CQ9NQ84 441 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 TLR9Q9NR96 1032 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 CHST12Q9NRB3 414 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 AGPAT5Q9NUQ2 364 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 FAM105AQ9NUU6 356 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 MIOSQ9NXC5 875 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 PCDHA12Q9UN75 941 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 PIN4Q9Y237 131 aaKnown RBP11.71□□□□□ -0.53
LIG1-213ENST00000596672 USP20Q9Y2K6 914 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 PCDHB12Q9Y5F1 795 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 F8W810 466 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 B4GALT5O43286 388 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 NEMFO60524 1076 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 LAG3P18627 525 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 RFC5P40937 340 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 RBM25P49756 843 aaKnown RBP11.7□□□□□ -0.54
LIG1-213ENST00000596672 POLGP54098 1239 aaPredicted RBP11.7□□□□□ -0.54
LIG1-213ENST00000596672 BCAR1P56945 870 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 PTENP60484 403 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 PLPP4Q5VZY2 271 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 SYCE2Q6PIF2 218 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 FAM43BQ6ZT52 329 aaPredicted RBP11.7□□□□□ -0.54
LIG1-213ENST00000596672 CATSPER4Q7RTX7 472 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 SLFN12Q8IYM2 578 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 ZNF710Q8N1W2 664 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 RNF149Q8NC42 400 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 SMRP1Q8NCR6 262 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 BSNDQ8WZ55 320 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 S1PR5Q9H228 398 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 TBC1D13Q9NVG8 400 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 CD207Q9UJ71 328 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 HES2Q9Y543 173 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 PCDHB2Q9Y5E7 798 aa11.7□□□□□ -0.54
LIG1-213ENST00000596672 TSPAN1O60635 241 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 GALTP07902 379 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 SLC11A1P49279 550 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 DNM2P50570 870 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 UBE3AQ05086 875 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 MBTD1Q05BQ5 628 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 COASYQ13057 564 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 SMAD4Q13485 552 aaKnown RBP11.69□□□□□ -0.54
LIG1-213ENST00000596672 TWF2Q6IBS0 349 aaKnown RBP11.69□□□□□ -0.54
LIG1-213ENST00000596672 CDR2LQ86X02 465 aaPredicted RBP11.69□□□□□ -0.54
LIG1-213ENST00000596672 IFNLR1Q8IU57 520 aaPredicted RBP11.69□□□□□ -0.54
LIG1-213ENST00000596672 ADHFE1Q8IWW8 467 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 LRRC43Q8N309 656 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 PSPC1Q8WXF1 523 aaKnown RBP11.69□□□□□ -0.54
LIG1-213ENST00000596672 SLC7A3Q8WY07 619 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 SUSD6Q92537 303 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 CPB2Q96IY4 423 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 C8orf76Q96K31 380 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 ZNF558Q96NG5 402 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 NAP1L4Q99733 375 aaKnown RBP11.69□□□□□ -0.54
LIG1-213ENST00000596672 TLE6Q9H808 572 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 LZTS1Q9Y250 596 aa11.69□□□□□ -0.54
LIG1-213ENST00000596672 USP15Q9Y4E8 981 aaPredicted RBP11.69□□□□□ -0.54
LIG1-213ENST00000596672 C2orf71A6NGG8 1288 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 NCK2O43639 380 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 MARCH6O60337 910 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 BAG4O95429 457 aaKnown RBP11.68□□□□□ -0.54
LIG1-213ENST00000596672 EFEMP2O95967 443 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 SFPQP23246 707 aaKnown RBP eCLIP11.68□□□□□ -0.54
LIG1-213ENST00000596672 TECP42680 631 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 NDUFV1P49821 464 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 NOMO2Q5JPE7 1267 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 POTEGQ6S5H5 508 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 TAS1R1Q7RTX1 841 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 SRGAP1Q7Z6B7 1085 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 MRPL43Q8N983 215 aaKnown RBP11.68□□□□□ -0.54
LIG1-213ENST00000596672 GSTCDQ8NEC7 633 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 MICAL1Q8TDZ2 1067 aa11.68□□□□□ -0.54
LIG1-213ENST00000596672 MTRQ99707 1265 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms