RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 COLGALT1Q8NBJ5 622 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 HELQQ8TDG4 1101 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 PABPC5Q96DU9 382 aaKnown RBP16.98■□□□□ 0.31
TRIM28-203ENST00000593582 MRPL9Q9BYD2 267 aaKnown RBP16.98■□□□□ 0.31
TRIM28-203ENST00000593582 RAB34Q9BZG1 259 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 CWH43Q9H720 699 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 MINDY3Q9H8M7 445 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 FAM105AQ9NUU6 356 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 DBR1Q9UK59 544 aaKnown RBP16.98■□□□□ 0.31
TRIM28-203ENST00000593582 SMC3Q9UQE7 1217 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 PCDHB6Q9Y5E3 794 aa16.98■□□□□ 0.31
TRIM28-203ENST00000593582 TNFRSF10AO00220 468 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 LAD1O00515 517 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 USO1O60763 962 aaKnown RBP16.97■□□□□ 0.31
TRIM28-203ENST00000593582 ZNF623O75123 536 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 ERLIN2O94905 339 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 ARL2P36404 184 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 PTENP60484 403 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 HYAL1Q12794 435 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 PDIA5Q14554 519 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 COL19A1Q14993 1142 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 LEXMQ3ZCV2 418 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 GLB1LQ6UWU2 654 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 MCPH1Q8NEM0 835 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 PGBD4Q96DM1 585 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 CLDND1Q9NY35 253 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 LRWD1Q9UFC0 647 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 PCDHB2Q9Y5E7 798 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 STK24Q9Y6E0 443 aa16.97■□□□□ 0.31
TRIM28-203ENST00000593582 FNDC1Q4ZHG4 1894 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-203ENST00000593582 INO80B-WBP1J3KQ70 363 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 MUTP22033 750 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 HOXA11P31270 313 aaPredicted RBP16.96■□□□□ 0.31
TRIM28-203ENST00000593582 PPM1AP35813 382 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 CCT6AP40227 531 aaKnown RBP16.96■□□□□ 0.31
TRIM28-203ENST00000593582 LONRF3Q496Y0 759 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 RILPL1Q5EBL4 403 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 KCNT2Q6UVM3 1135 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 ASAP3Q8TDY4 903 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 MICAL1Q8TDZ2 1067 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 LPPQ93052 612 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 ZNF558Q96NG5 402 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 NFKBIZQ9BYH8 718 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 POLR3FQ9H1D9 316 aaPredicted RBP16.96■□□□□ 0.31
TRIM28-203ENST00000593582 IGFLR1Q9H665 355 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 TLR9Q9NR96 1032 aa16.96■□□□□ 0.31
TRIM28-203ENST00000593582 PUF60Q9UHX1 559 aaKnown RBP16.96■□□□□ 0.31
TRIM28-203ENST00000593582 ARHGEF35A5YM69 484 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 H3BQ06 376 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-203ENST00000593582 GLRA2P23416 452 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 AXLP30530 894 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 IRS1P35568 1242 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 ALDH7A1P49419 539 aaKnown RBP16.95■□□□□ 0.3
TRIM28-203ENST00000593582 KRT17Q04695 432 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 CAPSQ13938 189 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 PUS10Q3MIT2 529 aaKnown RBP16.95■□□□□ 0.3
TRIM28-203ENST00000593582 NOTUMQ6P988 496 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 DTHD1Q6ZMT9 781 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 MAEAQ7L5Y9 396 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 IFNLR1Q8IU57 520 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-203ENST00000593582 IGSF22Q8N9C0 903 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 NECAB3Q96P71 396 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-203ENST00000593582 LZTS1Q9Y250 596 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 ARID2Q68CP9 1835 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 KIAA1671Q9BY89 1806 aa16.95■□□□□ 0.3
TRIM28-203ENST00000593582 TSPAN1O60635 241 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 PBX3P40426 434 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 PRPHP41219 470 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 PLCB3Q01970 1234 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 MBTD1Q05BQ5 628 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 CTC1Q2NKJ3 1217 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 NOMO2Q5JPE7 1267 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 LARP1BQ659C4 914 aaKnown RBP16.94■□□□□ 0.3
TRIM28-203ENST00000593582 PTCRAQ6ISU1 281 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-203ENST00000593582 PDE12Q6L8Q7 609 aaKnown RBP16.94■□□□□ 0.3
TRIM28-203ENST00000593582 PADI6Q6TGC4 694 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-203ENST00000593582 MRPS27Q92552 414 aaKnown RBP16.94■□□□□ 0.3
TRIM28-203ENST00000593582 CCDC51Q96ER9 411 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 BACH2Q9BYV9 841 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 GPRC5CQ9NQ84 441 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.94■□□□□ 0.3
TRIM28-203ENST00000593582 SPG21Q9NZD8 308 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 INPP5FQ9Y2H2 1132 aa16.94■□□□□ 0.3
TRIM28-203ENST00000593582 CARNS1A5YM72 827 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 LRRIQ4A6NIV6 560 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 MEIS3P2A8K0S8 358 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 BCAR1P56945 870 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 RNASELQ05823 741 aaKnown RBP16.93■□□□□ 0.3
TRIM28-203ENST00000593582 KRT79Q5XKE5 535 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 MRPL10Q7Z7H8 261 aaKnown RBP16.93■□□□□ 0.3
TRIM28-203ENST00000593582 CNNM3Q8NE01 707 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 URGCPQ8TCY9 931 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 SNX29Q8TEQ0 813 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 TLE6Q9H808 572 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 KIAA1024Q9UPX6 916 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 FAM50BQ9Y247 325 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 BRWD1Q9NSI6 2320 aa16.93■□□□□ 0.3
TRIM28-203ENST00000593582 GRXCR2A6NFK2 248 aa16.92■□□□□ 0.3
TRIM28-203ENST00000593582 ZC3H11AO75152 810 aaKnown RBP eCLIP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms