RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 NPEPPSP55786 919 aa26.79■■□□□ 1.88
LSM4-202ENST00000593564 TPRNQ4KMQ1 711 aa26.79■■□□□ 1.88
LSM4-202ENST00000593564 NOMO2Q5JPE7 1267 aa26.79■■□□□ 1.88
LSM4-202ENST00000593564 EXOC8Q8IYI6 725 aa26.79■■□□□ 1.88
LSM4-202ENST00000593564 NAP1L4Q99733 375 aaKnown RBP26.79■■□□□ 1.88
LSM4-202ENST00000593564 SLKQ9H2G2 1235 aaPredicted RBP26.79■■□□□ 1.88
LSM4-202ENST00000593564 IFT122Q9HBG6 1241 aa26.79■■□□□ 1.88
LSM4-202ENST00000593564 TBC1D13Q9NVG8 400 aa26.79■■□□□ 1.88
LSM4-202ENST00000593564 COL4A3BPQ9Y5P4 624 aa26.79■■□□□ 1.88
LSM4-202ENST00000593564 TBX3O15119 743 aa26.78■■□□□ 1.88
LSM4-202ENST00000593564 CLASP2O75122 1294 aaKnown RBP26.78■■□□□ 1.88
LSM4-202ENST00000593564 SIGLEC14Q08ET2 396 aa26.78■■□□□ 1.88
LSM4-202ENST00000593564 VPS52Q8N1B4 723 aa26.78■■□□□ 1.88
LSM4-202ENST00000593564 CEP170P1Q96L14 293 aa26.78■■□□□ 1.88
LSM4-202ENST00000593564 ZBP1Q9H171 429 aa26.78■■□□□ 1.88
LSM4-202ENST00000593564 DHX33Q9H6R0 707 aaKnown RBP26.78■■□□□ 1.88
LSM4-202ENST00000593564 AGPAT5Q9NUQ2 364 aa26.78■■□□□ 1.88
LSM4-202ENST00000593564 WRAP73Q9P2S5 460 aaPredicted RBP26.78■■□□□ 1.88
LSM4-202ENST00000593564 ZDBF2Q9HCK1 2354 aa26.78■■□□□ 1.88
LSM4-202ENST00000593564 MEIS3P2A8K0S8 358 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 PFKFB2O60825 505 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 CXCL14O95715 111 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 RFC5P40937 340 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 POLGP54098 1239 aaPredicted RBP26.77■■□□□ 1.88
LSM4-202ENST00000593564 ITIH3Q06033 890 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 PTPN21Q16825 1174 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 LONRF3Q496Y0 759 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 PIK3AP1Q6ZUJ8 805 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 DDX53Q86TM3 631 aaKnown RBP26.77■■□□□ 1.88
LSM4-202ENST00000593564 TMEM173Q86WV6 379 aaPredicted RBP26.77■■□□□ 1.88
LSM4-202ENST00000593564 ZNF579Q8NAF0 562 aaKnown RBP26.77■■□□□ 1.88
LSM4-202ENST00000593564 HAS1Q92839 578 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 IGSF21Q96ID5 467 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 NECTIN4Q96NY8 510 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 ADAM7Q9H2U9 754 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 NRDE2Q9H7Z3 1164 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 IRAK3Q9Y616 596 aa26.77■■□□□ 1.88
LSM4-202ENST00000593564 CCNT1O60563 726 aaKnown RBP26.76■■□□□ 1.87
LSM4-202ENST00000593564 OFD1O75665 1012 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 GALTP07902 379 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 EPHA7Q15375 998 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 CES5AQ6NT32 575 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 C4orf19Q8IY42 314 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 OXER1Q8TDS5 423 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 PSPC1Q8WXF1 523 aaKnown RBP26.76■■□□□ 1.87
LSM4-202ENST00000593564 PGBD4Q96DM1 585 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 TPCN1Q9ULQ1 816 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 INPP5FQ9Y2H2 1132 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 PCDHB2Q9Y5E7 798 aa26.76■■□□□ 1.87
LSM4-202ENST00000593564 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP26.75■■□□□ 1.87
LSM4-202ENST00000593564 CTSAP10619 480 aa26.75■■□□□ 1.87
LSM4-202ENST00000593564 CA8P35219 290 aa26.75■■□□□ 1.87
LSM4-202ENST00000593564 MRE11P49959 708 aa26.75■■□□□ 1.87
LSM4-202ENST00000593564 GIT2Q14161 759 aa26.75■■□□□ 1.87
LSM4-202ENST00000593564 SRGAP1Q7Z6B7 1085 aa26.75■■□□□ 1.87
LSM4-202ENST00000593564 SUGP1Q8IWZ8 645 aaKnown RBP26.75■■□□□ 1.87
LSM4-202ENST00000593564 FBXL6Q8N531 539 aa26.75■■□□□ 1.87
LSM4-202ENST00000593564 PRPF31Q8WWY3 499 aaKnown RBP26.75■■□□□ 1.87
LSM4-202ENST00000593564 LXNQ9BS40 222 aa26.75■■□□□ 1.87
LSM4-202ENST00000593564 GJB4Q9NTQ9 266 aa26.75■■□□□ 1.87
LSM4-202ENST00000593564 NR2E1Q9Y466 385 aa26.75■■□□□ 1.87
LSM4-202ENST00000593564 GAS2O43903 313 aaKnown RBP26.74■■□□□ 1.87
LSM4-202ENST00000593564 RNASELQ05823 741 aaKnown RBP26.74■■□□□ 1.87
LSM4-202ENST00000593564 BCL7CQ8WUZ0 217 aaPredicted RBP26.74■■□□□ 1.87
LSM4-202ENST00000593564 TMEM143Q96AN5 459 aa26.74■■□□□ 1.87
LSM4-202ENST00000593564 ASIC4Q96FT7 647 aa26.74■■□□□ 1.87
LSM4-202ENST00000593564 CDH22Q9UJ99 828 aa26.74■■□□□ 1.87
LSM4-202ENST00000593564 MARCH6O60337 910 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 SP100P23497 879 aaPredicted RBP26.73■■□□□ 1.87
LSM4-202ENST00000593564 YWHABP31946 246 aaKnown RBP26.73■■□□□ 1.87
LSM4-202ENST00000593564 LAMTOR4Q0VGL1 99 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 AGMOQ6ZNB7 445 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 OTUD6AQ7L8S5 288 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 MRPL10Q7Z7H8 261 aaKnown RBP26.73■■□□□ 1.87
LSM4-202ENST00000593564 POTEDQ86YR6 584 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 TCP11Q8WWU5 503 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 AUTS2Q8WXX7 1259 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 POMKQ9H5K3 350 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 MINDY3Q9H8M7 445 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 TSHZ2Q9NRE2 1034 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 DZANK1Q9NVP4 752 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 DNAJB4Q9UDY4 337 aa26.73■■□□□ 1.87
LSM4-202ENST00000593564 CTDNEP1O95476 244 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 SRGAP2CP0DJJ0 459 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 HOXA11P31270 313 aaPredicted RBP26.72■■□□□ 1.87
LSM4-202ENST00000593564 MTHFRP42898 656 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 SLC11A1P49279 550 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 SPIRE1Q08AE8 756 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 EMC2Q15006 297 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 EARS2Q5JPH6 523 aaKnown RBP26.72■■□□□ 1.87
LSM4-202ENST00000593564 NCAPH2Q6IBW4 605 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 SLFN12Q8IYM2 578 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 TMEM87AQ8NBN3 555 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 PRSS33Q8NF86 280 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 URGCPQ8TCY9 931 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 WASF1Q92558 559 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 PRRX2Q99811 253 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 ZSWIM4Q9H7M6 989 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 RGL1Q9NZL6 768 aa26.72■■□□□ 1.87
LSM4-202ENST00000593564 ORC3Q9UBD5 711 aaPredicted RBP26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms