RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	RWDD3	Q9Y3V2	267 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	CLIC4	Q9Y696	253 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	MRPL42	Q9Y6G3	142 aa	Known RBP	10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	PRRC2B	Q5JSZ5	2229 aa	Known RBP	10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	LRRIQ4	A6NIV6	560 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	TBKBP1	A7MCY6	615 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239		E9PMD0	336 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	C5orf67	F2Z3F1	127 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239		H3BNC9	293 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	INO80B-WBP1	J3KQ70	363 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	HOXA2	O43364	376 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	ERLIN2	O94905	339 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	EYA4	O95677	639 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	EOMES	O95936	686 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	RB1	P06400	928 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	SKI	P12755	728 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	ATF7	P17544	494 aa	Predicted RBP	10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	GPM6B	Q13491	265 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	PCBP1	Q15365	356 aa	Known RBP eCLIP	10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	ZRSR1	Q15695	479 aa	Known RBP	10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	KCNK18	Q7Z418	384 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	ZNF598	Q86UK7	904 aa	Known RBP	10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	SLC17A8	Q8NDX2	589 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	NT5C3A	Q9H0P0	336 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	RNF19A	Q9NV58	838 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	LMCD1	Q9NZU5	365 aa		10.19	□□□□□ -0.78
DNMT1-223	ENST00000591239	TSPAN1	O60635	241 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	ZNF623	O75123	536 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	PDIA4	P13667	645 aa	Known RBP	10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	AXL	P30530	894 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	LONP1	P36776	959 aa	Known RBP	10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	UBA7	P41226	1012 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	RAB27A	P51159	221 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	CEBPZ	Q03701	1054 aa	Known RBP	10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	GRIN1	Q05586	938 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	MBTD1	Q05BQ5	628 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	NCBP1	Q09161	790 aa	Known RBP	10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	PTPA	Q15257	358 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	CLLU1OS	Q5K130	101 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	CABP7	Q86V35	215 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	ABI1	Q8IZP0	508 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	KCTD17	Q8N5Z5	321 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	SPRYD3	Q8NCJ5	442 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	KIFAP3	Q92845	792 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	CDK5RAP3	Q96JB5	506 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	CASD1	Q96PB1	797 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	PNMA5	Q96PV4	448 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	PLIN2	Q99541	437 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	C11orf84	Q9BUA3	381 aa	Predicted RBP	10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	PLVAP	Q9BX97	442 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	TMEM117	Q9H0C3	514 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	POLD4	Q9HCU8	107 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	FAM105A	Q9NUU6	356 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	TYW1	Q9NV66	732 aa	Known RBP	10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	PCDHB2	Q9Y5E7	798 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	NLRC5	Q86WI3	1866 aa		10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	COL4A4	P53420	1690 aa	Predicted RBP	10.18	□□□□□ -0.78
DNMT1-223	ENST00000591239	RALGAPA2	Q2PPJ7	1873 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	SLC26A4	O43511	780 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	MARCKS	P29966	332 aa	Predicted RBP	10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	NAMPT	P43490	491 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	PPP2R5A	Q15172	486 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	AMHR2	Q16671	573 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	PTPRO	Q16827	1216 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	LONRF3	Q496Y0	759 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	TMEM119	Q4V9L6	283 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	NAALADL2	Q58DX5	795 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	UBXN11	Q5T124	520 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	SPOUT1	Q5T280	376 aa	Known RBP	10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	CDCA2	Q69YH5	1023 aa	Predicted RBP	10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	RINT1	Q6NUQ1	792 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	NOTUM	Q6P988	496 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	LRRC55	Q6ZSA7	311 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	C1orf186	Q6ZWK4	172 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	ZBTB8OS	Q8IWT0	167 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	SYT2	Q8N9I0	419 aa	Predicted RBP	10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	HELQ	Q8TDG4	1101 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	BSND	Q8WZ55	320 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	LPP	Q93052	612 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	P2RX5	Q93086	422 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	MRPL38	Q96DV4	380 aa	Known RBP	10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	CALML4	Q96GE6	196 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	CPB2	Q96IY4	423 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	IFT74	Q96LB3	600 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	RUSC1	Q9BVN2	902 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	C2orf40	Q9H1Z8	148 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	CWH43	Q9H720	699 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	HCST	Q9UBK5	93 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	PLAGL2	Q9UPG8	496 aa		10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	SRPRB	Q9Y5M8	271 aa	Known RBP	10.17	□□□□□ -0.78
DNMT1-223	ENST00000591239	MEIS3P2	A8K0S8	358 aa		10.16	□□□□□ -0.78
DNMT1-223	ENST00000591239	GRM6	O15303	877 aa		10.16	□□□□□ -0.78
DNMT1-223	ENST00000591239	B4GALT5	O43286	388 aa		10.16	□□□□□ -0.78
DNMT1-223	ENST00000591239	HIP1R	O75146	1068 aa		10.16	□□□□□ -0.78
DNMT1-223	ENST00000591239	SSB	P05455	408 aa	Known RBP eCLIP	10.16	□□□□□ -0.78
DNMT1-223	ENST00000591239	ITGB1	P05556	798 aa		10.16	□□□□□ -0.78
DNMT1-223	ENST00000591239	PLA2G4B	P0C869	781 aa		10.16	□□□□□ -0.78
DNMT1-223	ENST00000591239	ARF4	P18085	180 aa	Predicted RBP	10.16	□□□□□ -0.78
DNMT1-223	ENST00000591239	SLC12A3	P55017	1021 aa		10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms