RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 PROB1E7EW31 1015 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 DEFB103AP81534 67 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 COG2Q14746 738 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 SNAP47Q5SQN1 464 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 SPTY2D1Q68D10 685 aaPredicted RBP9.35□□□□□ -0.91
SMAD4-209ENST00000589941 ZNF765Q7L2R6 523 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 BMP8AQ7Z5Y6 402 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 PCSK9Q8NBP7 692 aaKnown RBP9.35□□□□□ -0.91
SMAD4-209ENST00000589941 EDAQ92838 391 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 TRMT13Q9NUP7 481 aaKnown RBP9.35□□□□□ -0.91
SMAD4-209ENST00000589941 LMCD1Q9NZU5 365 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 HMG20BQ9P0W2 317 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 PRKAG3Q9UGI9 489 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 ADAMTS1Q9UHI8 967 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 FAM184BQ9ULE4 1060 aa9.35□□□□□ -0.91
SMAD4-209ENST00000589941 PA2G4Q9UQ80 394 aaKnown RBP9.35□□□□□ -0.91
SMAD4-209ENST00000589941 SETXQ7Z333 2677 aaKnown RBP9.35□□□□□ -0.91
SMAD4-209ENST00000589941 LEFTY1O75610 366 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 MED26O95402 600 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 SHMT1P34896 483 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 EIF4A3P38919 411 aaKnown RBP9.34□□□□□ -0.91
SMAD4-209ENST00000589941 ETF1P62495 437 aaKnown RBP9.34□□□□□ -0.91
SMAD4-209ENST00000589941 ITGA7Q13683 1181 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 SEPT2Q15019 361 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 NKG7Q16617 165 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 TCTN1Q2MV58 587 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 CCDC144BQ3MJ40 725 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 TATDN1Q6P1N9 297 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 SUGP1Q8IWZ8 645 aaKnown RBP9.34□□□□□ -0.91
SMAD4-209ENST00000589941 RPUSD2Q8IZ73 545 aaKnown RBP9.34□□□□□ -0.91
SMAD4-209ENST00000589941 ZNF507Q8TCN5 953 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 RMDN1Q96DB5 314 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 METTL5Q9NRN9 209 aaKnown RBP9.34□□□□□ -0.91
SMAD4-209ENST00000589941 FBXO28Q9NVF7 368 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 RAI14Q9P0K7 980 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 DDX49Q9Y6V7 483 aaKnown RBP9.34□□□□□ -0.91
SMAD4-209ENST00000589941 MYH4Q9Y623 1939 aa9.34□□□□□ -0.91
SMAD4-209ENST00000589941 LINC01553A4QN01 128 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 FLOT1O75955 427 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 MAP4K4O95819 1239 aaPredicted RBP9.33□□□□□ -0.92
SMAD4-209ENST00000589941 PDGFBP01127 241 aaPredicted RBP9.33□□□□□ -0.92
SMAD4-209ENST00000589941 FAM87AP0C7U9 286 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 LTBRP36941 435 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 ANP32AP39687 249 aaKnown RBP9.33□□□□□ -0.92
SMAD4-209ENST00000589941 TIMM10P62072 90 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 DYNLL1P63167 89 aaKnown RBP9.33□□□□□ -0.92
SMAD4-209ENST00000589941 EXOSC9Q06265 439 aaKnown RBP9.33□□□□□ -0.92
SMAD4-209ENST00000589941 DLX2Q07687 328 aaPredicted RBP9.33□□□□□ -0.92
SMAD4-209ENST00000589941 ABCB5Q2M3G0 1257 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 ZNF394Q53GI3 561 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 TCEAL5Q5H9L2 206 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 TMEM63BQ5T3F8 832 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 OGFOD3Q6PK18 319 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 EP400NLQ6ZTU2 488 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 FOXP4Q8IVH2 680 aaPredicted RBP9.33□□□□□ -0.92
SMAD4-209ENST00000589941 SPICE1Q8N0Z3 855 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 RNF34Q969K3 372 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 PRRX2Q99811 253 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 C17orf80Q9BSJ5 609 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 OSBPL1AQ9BXW6 950 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 KATNBL1Q9H079 304 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 RCAN3Q9UKA8 241 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 DIS3Q9Y2L1 958 aaKnown RBP9.33□□□□□ -0.92
SMAD4-209ENST00000589941 PCDHGB7Q9Y5F8 929 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 CORINQ9Y5Q5 1042 aa9.33□□□□□ -0.92
SMAD4-209ENST00000589941 SPTBN2O15020 2390 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 SCAMP3O14828 347 aaKnown RBP9.32□□□□□ -0.92
SMAD4-209ENST00000589941 GREM1O60565 184 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 PFKMP08237 780 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 DEKP35659 375 aaKnown RBP9.32□□□□□ -0.92
SMAD4-209ENST00000589941 ERVK-21P61565 698 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 WDR5P61964 334 aaKnown RBP9.32□□□□□ -0.92
SMAD4-209ENST00000589941 GSTO1P78417 241 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 ACVR2BQ13705 512 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 COL9A2Q14055 689 aaPredicted RBP9.32□□□□□ -0.92
SMAD4-209ENST00000589941 SLBPQ14493 270 aaKnown RBP eCLIP9.32□□□□□ -0.92
SMAD4-209ENST00000589941 KCTD2Q14681 263 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 FRMD5Q7Z6J6 570 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 MB21D1Q8N884 522 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 REPS2Q8NFH8 660 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 PHOSPHO2Q8TCD6 241 aa9.32□□□□□ -0.92
SMAD4-209ENST00000589941 ALDH8A1Q9H2A2 487 aaPredicted RBP9.32□□□□□ -0.92
SMAD4-209ENST00000589941 ZNF214Q9UL59 606 aaPredicted RBP9.32□□□□□ -0.92
SMAD4-209ENST00000589941 POLR3KQ9Y2Y1 108 aaPredicted RBP9.32□□□□□ -0.92
SMAD4-209ENST00000589941 CIAO1O76071 339 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 HLA-DOAP06340 250 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 LDHCP07864 332 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 ACTN1P12814 892 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 NBL1P41271 181 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 MCAMP43121 646 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 RACK1P63244 317 aaKnown RBP9.31□□□□□ -0.92
SMAD4-209ENST00000589941 SMAD2Q15796 467 aaKnown RBP9.31□□□□□ -0.92
SMAD4-209ENST00000589941 MAMDC4Q6UXC1 1216 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 RPAINQ86UA6 219 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 RIOX2Q8IUF8 465 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 ADSSL1Q8N142 457 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 TOP6BLQ8N6T0 577 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 SPATA5Q8NB90 893 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 GIMAP7Q8NHV1 300 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 PABPC5Q96DU9 382 aaKnown RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms