RNA–Protein interactions for RNA: ENST00000589867.2

MBD1-221, Transcript of methyl-CpG binding domain protein 1, human

TSL 3

Gene MBD1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-221	ENST00000589867		H3BNC9	293 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	TSPAN1	O60635	241 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	PHKA2	P46019	1235 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	MAPK7	Q13164	816 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	PKP1	Q13835	747 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	CCDC85B	Q15834	202 aa	Predicted RBP	19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	CDCA2	Q69YH5	1023 aa	Predicted RBP	19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	MCPH1	Q8NEM0	835 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	USP28	Q96RU2	1077 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	CWH43	Q9H720	699 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	LRFN2	Q9ULH4	789 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	STK24	Q9Y6E0	443 aa		19.21	■□□□□ 0.67
MBD1-221	ENST00000589867	TBKBP1	A7MCY6	615 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	ZNF623	O75123	536 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	EDN1	P05305	212 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	CAMK1	Q14012	370 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	C1orf186	Q6ZWK4	172 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	USP49	Q70CQ1	688 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	LPP	Q93052	612 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	CCDC43	Q96MW1	224 aa	Known RBP	19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	PLIN2	Q99541	437 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	DACT1	Q9NYF0	836 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	FBXO2	Q9UK22	296 aa	Predicted RBP	19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	PLXNA4	Q9HCM2	1894 aa		19.2	■□□□□ 0.66
MBD1-221	ENST00000589867	TTLL13P	A6NNM8	815 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	GRM6	O15303	877 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	B4GALT5	O43286	388 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	BMP15	O95972	392 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	CTNNB1	P35222	781 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	GPM6B	Q13491	265 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	TWF2	Q6IBS0	349 aa	Known RBP	19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	RINT1	Q6NUQ1	792 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	MRPL10	Q7Z7H8	261 aa	Known RBP	19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	PPM1E	Q8WY54	764 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	TMEM117	Q9H0C3	514 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	FAM105A	Q9NUU6	356 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	TYW1	Q9NV66	732 aa	Known RBP	19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	LMCD1	Q9NZU5	365 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	DNM3	Q9UQ16	869 aa		19.19	■□□□□ 0.66
MBD1-221	ENST00000589867	INO80B-WBP1	J3KQ70	363 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	EOMES	O95936	686 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	RB1	P06400	928 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	ARF4	P18085	180 aa	Predicted RBP	19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	DNAJB1	P25685	340 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	MARCKS	P29966	332 aa	Predicted RBP	19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	SLC12A3	P55017	1021 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	TFDP1	Q14186	410 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	CABP7	Q86V35	215 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	SPRYD3	Q8NCJ5	442 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	SMG8	Q8ND04	991 aa	Known RBP	19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	CPB2	Q96IY4	423 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	AK8	Q96MA6	479 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	KIFC3	Q9BVG8	833 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	EIF2A	Q9BY44	585 aa	Known RBP	19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	CCDC113	Q9H0I3	377 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	FZD8	Q9H461	694 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	BLOC1S4	Q9NUP1	217 aa		19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	MORC2	Q9Y6X9	1032 aa	Predicted RBP	19.18	■□□□□ 0.66
MBD1-221	ENST00000589867	LONP1	P36776	959 aa	Known RBP	19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	AFF1	P51825	1210 aa	Known RBP	19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	CEBPZ	Q03701	1054 aa	Known RBP	19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	ZRSR1	Q15695	479 aa	Known RBP	19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	LONRF3	Q496Y0	759 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	SPECC1	Q5M775	1068 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	AGMO	Q6ZNB7	445 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	MICALL1	Q8N3F8	863 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	SYT2	Q8N9I0	419 aa	Predicted RBP	19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	RNF169	Q8NCN4	708 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	HELQ	Q8TDG4	1101 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	CLIC6	Q96NY7	704 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	CSRNP2	Q9H175	543 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	PLAGL2	Q9UPG8	496 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	USP20	Q9Y2K6	914 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	PCDHB2	Q9Y5E7	798 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	SRPRB	Q9Y5M8	271 aa	Known RBP	19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	TTC28	Q96AY4	2481 aa		19.17	■□□□□ 0.66
MBD1-221	ENST00000589867	CUL9	Q8IWT3	2517 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	MYH11	P35749	1972 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	LRRIQ4	A6NIV6	560 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	GTPBP6	O43824	516 aa	Predicted RBP	19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	B4GALT3	O60512	393 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	OFD1	O75665	1012 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	ITGB1	P05556	798 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	NAMPT	P43490	491 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	NASP	P49321	788 aa	Predicted RBP	19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	PCBP1	Q15365	356 aa	Known RBP eCLIP	19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	FAM187B	Q17R55	369 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	ARSH	Q5FYA8	562 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	FOXD4L5	Q5VV16	416 aa	Predicted RBP	19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	PPP4R3CP	Q6ZMV5	832 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	CDR2L	Q86X02	465 aa	Predicted RBP	19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	KLHL23	Q8NBE8	558 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	SPPL3	Q8TCT6	385 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	MRPL38	Q96DV4	380 aa	Known RBP	19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	EPSTI1	Q96J88	318 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	PLVAP	Q9BX97	442 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	RNF39	Q9H2S5	420 aa		19.16	■□□□□ 0.66
MBD1-221	ENST00000589867	ALG13	Q9NP73	1137 aa	Known RBP	19.16	■□□□□ 0.66

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms