RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SHMT1P34896 483 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 PLA2G4AP47712 749 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 HNRNPH2P55795 449 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 PDE4BQ07343 736 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 PTK7Q13308 1070 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 KCNC3Q14003 757 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 KRT32Q14532 448 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 NAA30Q147X3 362 aaPredicted RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 NECTIN1Q15223 517 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 NONOQ15233 471 aaKnown RBP eCLIP4.67□□□□□ -1.66
LIG3-211ENST00000588713 TRIM71Q2Q1W2 868 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 ARHGAP29Q52LW3 1261 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 FAM83BQ5T0W9 1011 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 CREB3L3Q68CJ9 461 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 NAA16Q6N069 864 aaPredicted RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 KIAA1841Q6NSI8 718 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 BLOC1S2Q6QNY1 142 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 C11orf57Q6ZUT1 292 aaPredicted RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 DHX40Q8IX18 779 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 DHX37Q8IY37 1157 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 THNSL1Q8IYQ7 743 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 FAM181AQ8N9Y4 354 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 ST13P5Q8NFI4 369 aaPredicted RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 FEZF2Q8TBJ5 459 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 RHPN1Q8TCX5 695 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 NELL1Q92832 810 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 COPS5Q92905 334 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 GTF3C6Q969F1 213 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 EXOC4Q96A65 974 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 NSUN4Q96CB9 384 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 GPR20Q99678 358 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 TCF25Q9BQ70 676 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 LLPHQ9BRT6 129 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 ALG1Q9BT22 464 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 CHMP4AQ9BY43 222 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 OSBPL7Q9BZF2 842 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 ARRDC1-AS1Q9H2J1 176 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 CCDC86Q9H6F5 360 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 VCPKMTQ9H867 229 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 RAVER2Q9HCJ3 691 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 IGSF9Q9P2J2 1179 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 HDAC6Q9UBN7 1215 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 GTF2IRD1Q9UHL9 959 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 SCN10AQ9Y5Y9 1956 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 SPTA1P02549 2419 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 KANSL1LA0AUZ9 987 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 FAM170BA6NMN3 283 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 C4orf47A7E2U8 309 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 F5H6K3 240 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 F6X3S4 739 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 CAPN9O14815 690 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 CBFA2T2O43439 604 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 WIPF1O43516 503 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 KPNA6O60684 536 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 BAG3O95817 575 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 CD72P21854 359 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 GBP2P32456 591 aaPredicted RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 WNT7BP56706 349 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 ETF1P62495 437 aaKnown RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 CFHR1Q03591 330 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 ICA1Q05084 483 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 FAM160A1Q05DH4 1040 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 ADCY1Q08828 1119 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 PPP2R5BQ15173 497 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 CAMK4Q16566 473 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 ADCK5Q3MIX3 580 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 TSGA10IPQ3SY00 556 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 E4F1Q66K89 784 aaPredicted RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 CCDC102BQ68D86 513 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 TCEAL6Q6IPX3 200 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 PI16Q6UXB8 463 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 TMC5Q6UXY8 1006 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 CEP68Q76N32 757 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 SRLQ86TD4 932 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 SESTD1Q86VW0 696 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 TEX2Q8IWB9 1127 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 RGS22Q8NE09 1264 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 MNS1Q8NEH6 495 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 DEFB124Q8NES8 71 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 FBXO18Q8NFZ0 1043 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 MDM1Q8TC05 714 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 AFG1LQ8WV93 481 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 UBXN4Q92575 508 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 TCEAL3Q969E4 200 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 KIFC2Q96AC6 838 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 CHMP4CQ96CF2 233 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 EVI5LQ96CN4 794 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 ZNF689Q96CS4 500 aaPredicted RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 SHDQ96IW2 340 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 PGBD1Q96JS3 809 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 ZNF396Q96N95 335 aaPredicted RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 NUP88Q99567 741 aaPredicted RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 SLF1Q9BQI6 1058 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 EDEM2Q9BV94 578 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 FAM126AQ9BYI3 521 aaPredicted RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 BICC1Q9H694 974 aaKnown RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 BCAS3Q9H6U6 928 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 SH2D4AQ9H788 454 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 ARHGEF10LQ9HCE6 1279 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 VTA1Q9NP79 307 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms