RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 POU5F1BQ06416 359 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 CLLU1OSQ5K130 101 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 PDE12Q6L8Q7 609 aaKnown RBP13.76□□□□□ -0.21
SS18-225ENST00000585121 GLB1LQ6UWU2 654 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 ZNF598Q86UK7 904 aaKnown RBP13.76□□□□□ -0.21
SS18-225ENST00000585121 IGFLR1Q9H665 355 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 CWH43Q9H720 699 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 XPNPEP1Q9NQW7 623 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 AGPAT5Q9NUQ2 364 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 FAM105AQ9NUU6 356 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 RNF19AQ9NV58 838 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 LRWD1Q9UFC0 647 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 DBR1Q9UK59 544 aaKnown RBP13.76□□□□□ -0.21
SS18-225ENST00000585121 REV3LO60673 3130 aa13.76□□□□□ -0.21
SS18-225ENST00000585121 NCOR1O75376 2440 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 LAD1O00515 517 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 ZNF623O75123 536 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 MED24O75448 989 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 AXLP30530 894 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 CCT6AP40227 531 aaKnown RBP13.75□□□□□ -0.21
SS18-225ENST00000585121 ALDH7A1P49419 539 aaKnown RBP13.75□□□□□ -0.21
SS18-225ENST00000585121 FXR2P51116 673 aaKnown RBP eCLIP13.75□□□□□ -0.21
SS18-225ENST00000585121 PDIA5Q14554 519 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 KCNT2Q6UVM3 1135 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 MCPH1Q8NEM0 835 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 TLR9Q9NR96 1032 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 LZTS1Q9Y250 596 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 BRWD1Q9NSI6 2320 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 MYO7AQ13402 2215 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 NLRC5Q86WI3 1866 aa13.75□□□□□ -0.21
SS18-225ENST00000585121 FSD2A1L4K1 749 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 ARHGEF35A5YM69 484 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 INO80B-WBP1J3KQ70 363 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 ATF7P17544 494 aaPredicted RBP13.74□□□□□ -0.21
SS18-225ENST00000585121 DNAJB1P25685 340 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 ARL2P36404 184 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 PTENP60484 403 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 RNASELQ05823 741 aaKnown RBP13.74□□□□□ -0.21
SS18-225ENST00000585121 HYAL1Q12794 435 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 PTGDRQ13258 359 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 NBR1Q14596 966 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 BMS1Q14692 1282 aaKnown RBP13.74□□□□□ -0.21
SS18-225ENST00000585121 RILPL1Q5EBL4 403 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 PTCRAQ6ISU1 281 aaPredicted RBP13.74□□□□□ -0.21
SS18-225ENST00000585121 CNNM3Q8NE01 707 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 URGCPQ8TCY9 931 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 CCDC51Q96ER9 411 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 POLR3FQ9H1D9 316 aaPredicted RBP13.74□□□□□ -0.21
SS18-225ENST00000585121 MINDY3Q9H8M7 445 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 SPG21Q9NZD8 308 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 HCSTQ9UBK5 93 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 PCDHB2Q9Y5E7 798 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 A0A087WWV3 80 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 H3BQ06 376 aaPredicted RBP13.74□□□□□ -0.21
SS18-225ENST00000585121 CD2BP2O95400 341 aaKnown RBP13.74□□□□□ -0.21
SS18-225ENST00000585121 PLCB3Q01970 1234 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 CAMK1Q14012 370 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 COL19A1Q14993 1142 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 LONRF3Q496Y0 759 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 NOMO2Q5JPE7 1267 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 NOTUMQ6P988 496 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 POTEGQ6S5H5 508 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 DTHD1Q6ZMT9 781 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 LRRC55Q6ZSA7 311 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 MAEAQ7L5Y9 396 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 C4orf32Q8N8J7 132 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 ASAP3Q8TDY4 903 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 MRPS27Q92552 414 aaKnown RBP13.74□□□□□ -0.21
SS18-225ENST00000585121 LPPQ93052 612 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 NFKBIZQ9BYH8 718 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 TLE6Q9H808 572 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 UBN1Q9NPG3 1134 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 INPP5FQ9Y2H2 1132 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 PCDHB6Q9Y5E3 794 aa13.74□□□□□ -0.21
SS18-225ENST00000585121 LRRIQ4A6NIV6 560 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 GLRA2P23416 452 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 HOXA11P31270 313 aaPredicted RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 IRS1P35568 1242 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 NRIP1P48552 1158 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 NDUFV1P49821 464 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 TOB1P50616 345 aaPredicted RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 CAPSQ13938 189 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 CTC1Q2NKJ3 1217 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 KRT79Q5XKE5 535 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 LARP1BQ659C4 914 aaKnown RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 MRPL10Q7Z7H8 261 aaKnown RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 RBM23Q86U06 439 aaKnown RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 IFNLR1Q8IU57 520 aaPredicted RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 ZBTB8OSQ8IWT0 167 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 HACE1Q8IYU2 909 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 SNX29Q8TEQ0 813 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 NECAB3Q96P71 396 aaPredicted RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 CDCA3Q99618 268 aaPredicted RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 TRIM6Q9C030 488 aaPredicted RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 NGRNQ9NPE2 291 aaKnown RBP13.73□□□□□ -0.21
SS18-225ENST00000585121 ENTPD7Q9NQZ7 604 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 KANSL3Q9P2N6 904 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 CNTNAP2Q9UHC6 1331 aa13.73□□□□□ -0.21
SS18-225ENST00000585121 GRXCR2A6NFK2 248 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms