RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SLC9A9Q8IVB4 645 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 MAP4K3Q8IVH8 894 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 C12orf56Q8IXR9 622 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 CCDC155Q8N6L0 562 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 PPTC7Q8NI37 304 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 TRAPPC12Q8WVT3 735 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 SOCS4Q8WXH5 440 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 PANX2Q96RD6 677 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 APBA2Q99767 749 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 BAG1Q99933 345 aaPredicted RBP11.52□□□□□ -0.57
SS18-217ENST00000580958 MKNK1Q9BUB5 465 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 NUP58Q9BVL2 599 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 PCIF1Q9H4Z3 704 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 METTL14Q9HCE5 456 aaKnown RBP11.52□□□□□ -0.57
SS18-217ENST00000580958 CGNQ9P2M7 1197 aaKnown RBP11.52□□□□□ -0.57
SS18-217ENST00000580958 FAM184BQ9ULE4 1060 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 TTC26A0AVF1 554 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 ANKRD63C9JTQ0 380 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 H0YCG3 227 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 EXOC3O60645 756 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 AFPP02771 609 aaKnown RBP11.51□□□□□ -0.57
SS18-217ENST00000580958 MMP3P08254 477 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 ZNF286BP0CG31 522 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 ZNF865P0CJ78 1059 aaPredicted RBP11.51□□□□□ -0.57
SS18-217ENST00000580958 CYP2C19P33261 490 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 KRT9P35527 623 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 SNRPFP62306 86 aaKnown RBP11.51□□□□□ -0.57
SS18-217ENST00000580958 TNFAIP2Q03169 654 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 PPP2R3AQ06190 1150 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 KCNMA1Q12791 1236 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 KCNH2Q12809 1159 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 NOGQ13253 232 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 DRP2Q13474 957 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 MYBPC2Q14324 1141 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 PPP2R5AQ15172 486 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 DCAF17Q5H9S7 520 aaPredicted RBP11.51□□□□□ -0.57
SS18-217ENST00000580958 ZNF484Q5JVG2 852 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 OLFML2BQ68BL8 750 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 TAS1R3Q7RTX0 852 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 CCDC51Q96ER9 411 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 BORCS6Q96GS4 357 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 CAPNS2Q96L46 248 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 CBWD1Q9BRT8 395 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 NTPCRQ9BSD7 190 aaKnown RBP11.51□□□□□ -0.57
SS18-217ENST00000580958 LSM14BQ9BX40 385 aaKnown RBP11.51□□□□□ -0.57
SS18-217ENST00000580958 TTYH3Q9C0H2 523 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 SPTLC3Q9NUV7 552 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 ERAP1Q9NZ08 941 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 HSPBP1Q9NZL4 362 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 ARHGAP28Q9P2N2 729 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 KCNG1Q9UIX4 513 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 CAPN11Q9UMQ6 739 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 FRMD4BQ9Y2L6 1034 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 ANK1P16157 1881 aa11.51□□□□□ -0.57
SS18-217ENST00000580958 LRRIQ4A6NIV6 560 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 ALDH1A1P00352 501 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 XRCC5P13010 732 aaKnown RBP11.5□□□□□ -0.57
SS18-217ENST00000580958 TRIM21P19474 475 aaKnown RBP11.5□□□□□ -0.57
SS18-217ENST00000580958 NAMPTP43490 491 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 PSMC4P43686 418 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 FCGRTP55899 365 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 IGBP1P78318 339 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 IRF5Q13568 498 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 CAPSQ13938 189 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 DEFB115Q30KQ5 88 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 TCERG1LQ5VWI1 586 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 IER5Q5VY09 327 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 SLC39A4Q6P5W5 647 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 LRRC71Q8N4P6 559 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 RETREG2Q8NC44 543 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 ZSWIM2Q8NEG5 633 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 DEPTORQ8TB45 409 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 TCP11Q8WWU5 503 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 BICD1Q96G01 975 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 CRACR2AQ9BSW2 395 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 ARHGAP39Q9C0H5 1083 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 RNPEPQ9H4A4 650 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 MMRN2Q9H8L6 949 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 SUGCTQ9HAC7 445 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 ABHD10Q9NUJ1 306 aa11.5□□□□□ -0.57
SS18-217ENST00000580958 LUC7L2Q9Y383 392 aaKnown RBP11.5□□□□□ -0.57
SS18-217ENST00000580958 IGKV6-21A0A0C4DH24 114 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 GOLGA8IPA6NC78 632 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 GOLGA8JA6NMD2 632 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 RIOK3O14730 519 aaKnown RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 EPHB6O15197 1021 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 ARHGAP6O43182 974 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 DYNC1LI2O43237 492 aaPredicted RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 GAS2O43903 313 aaKnown RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 STX10O60499 249 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 PPFIA4O75335 1185 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 TRIM49P0CI25 452 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 TRIM49CP0CI26 452 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 HOXD8P13378 290 aaPredicted RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 INSRRP14616 1297 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 FECHP22830 423 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 ABCD1P33897 745 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 KCNJ6P48051 423 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 FIGNQ5HY92 759 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 EXOC8Q8IYI6 725 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms