RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 CWH43Q9H720 699 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 HCSTQ9UBK5 93 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 KIAA1671Q9BY89 1806 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 U2AF2P26368 475 aaKnown RBP eCLIP17.24■□□□□ 0.35
SF3B3-215ENST00000577085 NDUFV1P49821 464 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 RNASELQ05823 741 aaKnown RBP17.24■□□□□ 0.35
SF3B3-215ENST00000577085 CAMK1Q14012 370 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 BMS1Q14692 1282 aaKnown RBP17.24■□□□□ 0.35
SF3B3-215ENST00000577085 PDE12Q6L8Q7 609 aaKnown RBP17.24■□□□□ 0.35
SF3B3-215ENST00000577085 KCNT2Q6UVM3 1135 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 RBM23Q86U06 439 aaKnown RBP17.24■□□□□ 0.35
SF3B3-215ENST00000577085 ZNF598Q86UK7 904 aaKnown RBP17.24■□□□□ 0.35
SF3B3-215ENST00000577085 CATSPER3Q86XQ3 398 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 URGCPQ8TCY9 931 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 LPPQ93052 612 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 POLR3CQ9BUI4 534 aaPredicted RBP17.24■□□□□ 0.35
SF3B3-215ENST00000577085 TLE6Q9H808 572 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 ENTPD7Q9NQZ7 604 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 RNF19AQ9NV58 838 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 SPG21Q9NZD8 308 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 INPP5FQ9Y2H2 1132 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 PCDHB2Q9Y5E7 798 aa17.24■□□□□ 0.35
SF3B3-215ENST00000577085 FNDC1Q4ZHG4 1894 aaPredicted RBP17.24■□□□□ 0.35
SF3B3-215ENST00000577085 SPTBN5Q9NRC6 3674 aaKnown RBP17.24■□□□□ 0.35
SF3B3-215ENST00000577085 TCF20Q9UGU0 1960 aaKnown RBP17.23■□□□□ 0.35
SF3B3-215ENST00000577085 A0A087WWV3 80 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 ARHGEF35A5YM69 484 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 CARNS1A5YM72 827 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 CA8P35219 290 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 IRS1P35568 1242 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 NRIP1P48552 1158 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 NBR1Q14596 966 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 POTEGQ6S5H5 508 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 LRRC55Q6ZSA7 311 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 MAEAQ7L5Y9 396 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 MCPH1Q8NEM0 835 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.23■□□□□ 0.35
SF3B3-215ENST00000577085 MRPS27Q92552 414 aaKnown RBP17.23■□□□□ 0.35
SF3B3-215ENST00000577085 TBC1D32Q96NH3 1257 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 TRIM6Q9C030 488 aaPredicted RBP17.23■□□□□ 0.35
SF3B3-215ENST00000577085 POLR3FQ9H1D9 316 aaPredicted RBP17.23■□□□□ 0.35
SF3B3-215ENST00000577085 MINDY3Q9H8M7 445 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 XPNPEP1Q9NQW7 623 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 LRWD1Q9UFC0 647 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 SMC3Q9UQE7 1217 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.23■□□□□ 0.35
SF3B3-215ENST00000577085 STK24Q9Y6E0 443 aa17.23■□□□□ 0.35
SF3B3-215ENST00000577085 FSD2A1L4K1 749 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 ZC3H11AO75152 810 aaKnown RBP eCLIP17.22■□□□□ 0.35
SF3B3-215ENST00000577085 MED24O75448 989 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 SPATA31C1P0DKV0 1188 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 ATF7P17544 494 aaPredicted RBP17.22■□□□□ 0.35
SF3B3-215ENST00000577085 RPA1P27694 616 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 GJB2P29033 226 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 AXLP30530 894 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 SSTR3P32745 418 aaPredicted RBP17.22■□□□□ 0.35
SF3B3-215ENST00000577085 GTF2F1P35269 517 aaKnown RBP eCLIP17.22■□□□□ 0.35
SF3B3-215ENST00000577085 CCT6AP40227 531 aaKnown RBP17.22■□□□□ 0.35
SF3B3-215ENST00000577085 PBX3P40426 434 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 PTENP60484 403 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 PLCB3Q01970 1234 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 CLUL1Q15846 466 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 NOMO2Q5JPE7 1267 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 NOTUMQ6P988 496 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 TMEM169Q96HH4 297 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 FAM193BQ96PV7 902 aaPredicted RBP17.22■□□□□ 0.35
SF3B3-215ENST00000577085 TCF25Q9BQ70 676 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 DBR1Q9UK59 544 aaKnown RBP17.22■□□□□ 0.35
SF3B3-215ENST00000577085 LZTS1Q9Y250 596 aa17.22■□□□□ 0.35
SF3B3-215ENST00000577085 ARID2Q68CP9 1835 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 GRXCR2A6NFK2 248 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 LRRIQ4A6NIV6 560 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 LAD1O00515 517 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 ZNF623O75123 536 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 SRGAP2BP0DMP2 458 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 IL9P15248 144 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 ARL2P36404 184 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 FXR2P51116 673 aaKnown RBP eCLIP17.21■□□□□ 0.351e-6■■■■□ 20.9
SF3B3-215ENST00000577085 BCAR1P56945 870 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 POU5F1BQ06416 359 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 PTGDRQ13258 359 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 CAPSQ13938 189 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 COL19A1Q14993 1142 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 CTC1Q2NKJ3 1217 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 PLPP4Q5VZY2 271 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 TMC7Q7Z402 723 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 ADGRD2Q7Z7M1 963 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 ZBTB8OSQ8IWT0 167 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 HACE1Q8IYU2 909 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 TMEM87AQ8NBN3 555 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 CNNM3Q8NE01 707 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 ASAP3Q8TDY4 903 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 GBP3Q9H0R5 595 aa17.21■□□□□ 0.35
SF3B3-215ENST00000577085 NGRNQ9NPE2 291 aaKnown RBP17.21■□□□□ 0.35
SF3B3-215ENST00000577085 LINC01565O15544 149 aa17.2■□□□□ 0.34
SF3B3-215ENST00000577085 TSPAN1O60635 241 aa17.2■□□□□ 0.34
SF3B3-215ENST00000577085 MUTP22033 750 aa17.2■□□□□ 0.34
SF3B3-215ENST00000577085 GLRA2P23416 452 aa17.2■□□□□ 0.34
SF3B3-215ENST00000577085 ERVFC1P60507 584 aa17.2■□□□□ 0.34
SF3B3-215ENST00000577085 ADAM15Q13444 863 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms