RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 USP49Q70CQ1 688 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 IFNLR1Q8IU57 520 aaPredicted RBP12.21□□□□□ -0.45
CHD3-216ENST00000573936 KSR1Q8IVT5 923 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 ZBTB8OSQ8IWT0 167 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 LEO1Q8WVC0 666 aaPredicted RBP12.21□□□□□ -0.45
CHD3-216ENST00000573936 LARP4BQ92615 738 aaKnown RBP12.21□□□□□ -0.45
CHD3-216ENST00000573936 RAD54LQ92698 747 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 ZNF668Q96K58 619 aaPredicted RBP12.21□□□□□ -0.45
CHD3-216ENST00000573936 DRC1Q96MC2 740 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 PYM1Q9BRP8 204 aaKnown RBP12.21□□□□□ -0.45
CHD3-216ENST00000573936 NFKBIZQ9BYH8 718 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 C2orf40Q9H1Z8 148 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 C17orf75Q9HAS0 396 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 IFT122Q9HBG6 1241 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 CHST12Q9NRB3 414 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 C1orf112Q9NSG2 853 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 PCDHA7Q9UN72 937 aa12.21□□□□□ -0.45
CHD3-216ENST00000573936 TET1Q8NFU7 2136 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 STAG3L1P0CL83 205 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 AXLP30530 894 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 NAMPTP43490 491 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 CAPSQ13938 189 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 AXDND1Q5T1B0 1012 aaPredicted RBP12.2□□□□□ -0.46
CHD3-216ENST00000573936 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.2□□□□□ -0.46
CHD3-216ENST00000573936 SV2BQ7L1I2 683 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 CATSPER4Q7RTX7 472 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 HERC6Q8IVU3 1022 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 MYOCDQ8IZQ8 938 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 DEPTORQ8TB45 409 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 ASAP3Q8TDY4 903 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 ZBED2Q9BTP6 218 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 LRRC27Q9C0I9 530 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 GPRC5CQ9NQ84 441 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 RGS18Q9NS28 235 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 BLOC1S4Q9NUP1 217 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 CHMP5Q9NZZ3 219 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 HCN4Q9Y3Q4 1203 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 PCDHA11Q9Y5I1 949 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 EVPLQ92817 2033 aa12.2□□□□□ -0.46
CHD3-216ENST00000573936 PRRC2BQ5JSZ5 2229 aaKnown RBP12.19□□□□□ -0.46
CHD3-216ENST00000573936 PHLPP2Q6ZVD8 1323 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 ARID2Q68CP9 1835 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.19□□□□□ -0.46
CHD3-216ENST00000573936 LRRIQ4A6NIV6 560 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 HIP1RO75146 1068 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 SKIP12755 728 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 BMP1P13497 986 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 STAT6P42226 847 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 DEFB103AP81534 67 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 TFF2Q03403 129 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 MCM6Q14566 821 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 DSC3Q14574 896 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 ADALQ6DHV7 355 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 SLC24A5Q71RS6 500 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 GPBP1Q86WP2 473 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 IQUBQ8NA54 791 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 TOP1MTQ969P6 601 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 ADAM2Q99965 735 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 RUSC1Q9BVN2 902 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 TMX1Q9H3N1 280 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 CUEDC2Q9H467 287 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 DACT1Q9NYF0 836 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 ODF2LQ9ULJ1 636 aa12.19□□□□□ -0.46
CHD3-216ENST00000573936 LOXHD1Q8IVV2 1947 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 INO80B-WBP1J3KQ70 363 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 TLL1O43897 1013 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 CSDE1O75534 798 aaKnown RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 ERLIN2O94905 339 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 GJB5O95377 273 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 KRT18P05783 430 aaKnown RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 CA3P07451 260 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 FGFR4P22455 802 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 SARSP49591 514 aaKnown RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 EFNA5P52803 228 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 SMTNP53814 917 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 AMPD3Q01432 767 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 DMP1Q13316 513 aaPredicted RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 DHX8Q14562 1220 aaKnown RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 CSPP1Q1MSJ5 1256 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 RESP18Q5W5W9 173 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 CDCA2Q69YH5 1023 aaPredicted RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 SHC4Q6S5L8 630 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 RTN4RL1Q86UN2 441 aaPredicted RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 NPAS4Q8IUM7 802 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 PRIMPOLQ96LW4 560 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 NECAB3Q96P71 396 aaPredicted RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 RAD9AQ99638 391 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 PANK2Q9BZ23 570 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 ELAC1Q9H777 363 aaKnown RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 CERS4Q9HA82 394 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 MAGEF1Q9HAY2 307 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 PRMT7Q9NVM4 692 aaPredicted RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 LARSQ9P2J5 1176 aaKnown RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 LRFN2Q9ULH4 789 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 INSL6Q9Y581 213 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 PCDHB7Q9Y5E2 793 aa12.18□□□□□ -0.46
CHD3-216ENST00000573936 COL4A4P53420 1690 aaPredicted RBP12.18□□□□□ -0.46
CHD3-216ENST00000573936 TCHHQ07283 1943 aa12.17□□□□□ -0.46
CHD3-216ENST00000573936 PTPRSQ13332 1948 aa12.17□□□□□ -0.46
CHD3-216ENST00000573936 SIP14410 1827 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms