RNA–Protein interactions for RNA: ENST00000571186.5

CIITA-205, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 1,041 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-205ENST00000571186 GIT2Q14161 759 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 TARBP2Q15633 366 aaKnown RBP16.09■□□□□ 0.17
CIITA-205ENST00000571186 ASTLQ6HA08 431 aaPredicted RBP16.09■□□□□ 0.17
CIITA-205ENST00000571186 KIAA1841Q6NSI8 718 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 GLB1LQ6UWU2 654 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 TMC5Q6UXY8 1006 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 ASCL5Q7RTU5 278 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 DDX53Q86TM3 631 aaKnown RBP16.09■□□□□ 0.17
CIITA-205ENST00000571186 CABP7Q86V35 215 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 TMEM173Q86WV6 379 aaPredicted RBP16.09■□□□□ 0.17
CIITA-205ENST00000571186 GJA10Q969M2 543 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 ZNF274Q96GC6 653 aaPredicted RBP16.09■□□□□ 0.17
CIITA-205ENST00000571186 IGSF21Q96ID5 467 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 FDXACB1Q9BRP7 624 aaPredicted RBP16.09■□□□□ 0.17
CIITA-205ENST00000571186 SLC26A6Q9BXS9 759 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 GBP3Q9H0R5 595 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 NRDE2Q9H7Z3 1164 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 SEPT9Q9UHD8 586 aaPredicted RBP16.09■□□□□ 0.17
CIITA-205ENST00000571186 TPCN1Q9ULQ1 816 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 INPP5FQ9Y2H2 1132 aa16.09■□□□□ 0.17
CIITA-205ENST00000571186 TMEM150BA6NC51 233 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 EDIL3O43854 480 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 GALTP07902 379 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 SKIP12755 728 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 USP11P51784 963 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 NOMO2Q5JPE7 1267 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 MIER3Q7Z3K6 550 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 SLC22A17Q8WUG5 538 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 SLC5A5Q92911 643 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 SH2D3AQ9BRG2 576 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 NIFKQ9BYG3 293 aaKnown RBP16.08■□□□□ 0.16
CIITA-205ENST00000571186 INO80BQ9C086 356 aaPredicted RBP16.08■□□□□ 0.16
CIITA-205ENST00000571186 TBC1D13Q9NVG8 400 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 SUCLA2Q9P2R7 463 aaPredicted RBP16.08■□□□□ 0.16
CIITA-205ENST00000571186 PIN4Q9Y237 131 aaKnown RBP16.08■□□□□ 0.16
CIITA-205ENST00000571186 USTQ9Y2C2 406 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 GTF3C3Q9Y5Q9 886 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 IRAK3Q9Y616 596 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 DENND4AQ7Z401 1863 aa16.08■□□□□ 0.16
CIITA-205ENST00000571186 CARNS1A5YM72 827 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 DDX11L8A8MPP1 907 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 IFNAR1P17181 557 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 SFPQP23246 707 aaKnown RBP eCLIP16.07■□□□□ 0.16
CIITA-205ENST00000571186 CLCN5P51795 746 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 SCRN1Q12765 414 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 XKR3Q5GH77 459 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 CATSPER4Q7RTX7 472 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 PPFIBP1Q86W92 1011 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 RHPN2Q8IUC4 686 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 FLCNQ8NFG4 579 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 CCDC148Q8NFR7 591 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 RSPH1Q8WYR4 309 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 ACSF2Q96CM8 615 aaPredicted RBP16.07■□□□□ 0.16
CIITA-205ENST00000571186 CYP26B1Q9NR63 512 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 FAM105AQ9NUU6 356 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 VPS54Q9P1Q0 977 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 DNAJB4Q9UDY4 337 aa16.07■□□□□ 0.16
CIITA-205ENST00000571186 PRR23AA6NEV1 266 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 MEIS3P2A8K0S8 358 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 EIF5BO60841 1220 aaKnown RBP16.06■□□□□ 0.16
CIITA-205ENST00000571186 OFD1O75665 1012 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 LARGE1O95461 756 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 KLRC2P26717 231 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 NBL1P41271 181 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 NEK4P51957 841 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 NLRP5P59047 1200 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 KSR1Q8IVT5 923 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 RDM1Q8NG50 284 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 FEZF2Q8TBJ5 459 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 BCL7CQ8WUZ0 217 aaPredicted RBP16.06■□□□□ 0.16
CIITA-205ENST00000571186 TRAIPQ9BWF2 469 aa16.06■□□□□ 0.16
CIITA-205ENST00000571186 IGKV6-21A0A0C4DH24 114 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 ZNF623O75123 536 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 PSMD10O75832 226 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 SSBP05455 408 aaKnown RBP eCLIP16.05■□□□□ 0.16
CIITA-205ENST00000571186 SLC11A1P49279 550 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 OTOP3Q7RTS5 596 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 GPR149Q86SP6 731 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 ZNF410Q86VK4 478 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 ZNF280BQ86YH2 543 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 NECAB1Q8N987 351 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 TBCKQ8TEA7 893 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 PGBD4Q96DM1 585 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 NLRP4Q96MN2 994 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 CEP89Q96ST8 783 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 KIF2CQ99661 725 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 EMILIN2Q9BXX0 1053 aa16.05■□□□□ 0.16
CIITA-205ENST00000571186 RNF26Q9BY78 433 aaPredicted RBP16.05■□□□□ 0.16
CIITA-205ENST00000571186 MTCL1Q9Y4B5 1905 aaKnown RBP16.04■□□□□ 0.16
CIITA-205ENST00000571186 CPLX1O14810 134 aa16.04■□□□□ 0.16
CIITA-205ENST00000571186 STBD1O95210 358 aa16.04■□□□□ 0.16
CIITA-205ENST00000571186 ALDH2P05091 517 aa16.04■□□□□ 0.16
CIITA-205ENST00000571186 RAB27AP51159 221 aa16.04■□□□□ 0.16
CIITA-205ENST00000571186 SSRP1Q08945 709 aaKnown RBP16.04■□□□□ 0.16
CIITA-205ENST00000571186 TDGQ13569 410 aa16.04■□□□□ 0.16
CIITA-205ENST00000571186 PTPN14Q15678 1187 aa16.04■□□□□ 0.16
CIITA-205ENST00000571186 ME3Q16798 604 aa16.04■□□□□ 0.16
CIITA-205ENST00000571186 Q4G0T1 1027 aa16.04■□□□□ 0.16
CIITA-205ENST00000571186 CCDC149Q6ZUS6 474 aa16.04■□□□□ 0.16
CIITA-205ENST00000571186 FRMD5Q7Z6J6 570 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms