RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NCKAP1LP55160 1127 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 PRKCEQ02156 737 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 MXD4Q14582 209 aaPredicted RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 NOLC1Q14978 699 aaKnown RBP eCLIP8.74□□□□□ -1.01
VPS39-213ENST00000570062 LRRC41Q15345 812 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 TAF1CQ15572 869 aaPredicted RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 ZNF484Q5JVG2 852 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 FAM102BQ5T8I3 360 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 IER5Q5VY09 327 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 LRRC55Q6ZSA7 311 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 ANO5Q75V66 913 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 ARMCX2Q7L311 632 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 TMTC1Q8IUR5 882 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 OR8K1Q8NGG5 319 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 CACTINQ8WUQ7 758 aaKnown RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 GLG1Q92896 1179 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 PCMTD1Q96MG8 357 aaPredicted RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 BAG1Q99933 345 aaPredicted RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 STRA6Q9BX79 667 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 PORCNQ9H237 461 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 TMX1Q9H3N1 280 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 KMT5AQ9NQR1 393 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 TAB2Q9NYJ8 693 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 ERAP1Q9NZ08 941 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 WRAP73Q9P2S5 460 aaPredicted RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 ZNF215Q9UL58 517 aaPredicted RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 CAPN11Q9UMQ6 739 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 LUC7L2Q9Y383 392 aaKnown RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 Q9Y3F1 56 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 GSTTP1A0A1W2PQM5 241 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 K7ENM7 598 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 TNFRSF10AO00220 468 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 P4HA2O15460 535 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 CA12O43570 354 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 GDF9O60383 454 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 USO1O60763 962 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 N4BP1O75113 896 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 STBD1O95210 358 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 IPO7O95373 1038 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 KRT13P13646 458 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 TRIM21P19474 475 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 RGS2P41220 211 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 NAMPTP43490 491 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 ZBED6P86452 979 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 SP2Q02086 613 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 POU5F1BQ06416 359 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 RAD51AP2Q09MP3 1159 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 STRN3Q13033 797 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 MAP2K5Q13163 448 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 NOGQ13253 232 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 TFDP1Q14186 410 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 ARHGEF6Q15052 776 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 PUS10Q3MIT2 529 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 CCDC144BQ3MJ40 725 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 OLFML2BQ68BL8 750 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 SLFN12LQ6IEE8 588 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 C17orf99Q6UX52 265 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 INTS8Q75QN2 995 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 HAUS6Q7Z4H7 955 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 CCDC60Q8IWA6 550 aaPredicted RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 TRIM59Q8IWR1 403 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 NELFCDQ8IXH7 590 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 PPTC7Q8NI37 304 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 ATP8B4Q8TF62 1192 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 HPS3Q969F9 1004 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 ABHD8Q96I13 439 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 MAML3Q96JK9 1138 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 FAM81BQ96LP2 452 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 SPATA33Q96N06 139 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 GPR20Q99678 358 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 PTPN18Q99952 460 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 TINF2Q9BSI4 451 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 C2orf40Q9H1Z8 148 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 DHX33Q9H6R0 707 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 PDLIM7Q9NR12 457 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 SPTLC3Q9NUV7 552 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 DMAC2Q9NW81 257 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 ABT1Q9ULW3 272 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 POLR2AP24928 1970 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 ASTN1O14525 1302 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 RBBP6Q7Z6E9 1792 aaKnown RBP8.73□□□□□ -1.01
VPS39-213ENST00000570062 COL1A2P08123 1366 aa8.73□□□□□ -1.01
VPS39-213ENST00000570062 FAM187AA6NFU0 413 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 CCDC169A6NNP5 214 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 RSPH10B2B2RC85 870 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 TEX33O43247 280 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 ZNF862O60290 1169 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 KPNA6O60684 536 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 MFAP3LO75121 409 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 MAFO75444 373 aaPredicted RBP8.72□□□□□ -1.01
VPS39-213ENST00000570062 PRPF6O94906 941 aaKnown RBP8.72□□□□□ -1.01
VPS39-213ENST00000570062 LDHAP00338 332 aaKnown RBP8.72□□□□□ -1.01
VPS39-213ENST00000570062 AFPP02771 609 aaKnown RBP8.72□□□□□ -1.01
VPS39-213ENST00000570062 CCDC172P0C7W6 258 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 RSPH10BP0C881 870 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 MYBP10242 640 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 GARTP22102 1010 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 RFX1P22670 979 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 TMOD1P28289 359 aa8.72□□□□□ -1.01
VPS39-213ENST00000570062 PEX3P56589 373 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms