RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 HAUS3Q68CZ6 603 aa22.57■■□□□ 1.2
CLK3-225ENST00000569063 LRRC43Q8N309 656 aa22.57■■□□□ 1.2
CLK3-225ENST00000569063 IGSF22Q8N9C0 903 aa22.57■■□□□ 1.2
CLK3-225ENST00000569063 COLGALT1Q8NBJ5 622 aa22.57■■□□□ 1.2
CLK3-225ENST00000569063 RSPH1Q8WYR4 309 aa22.57■■□□□ 1.2
CLK3-225ENST00000569063 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.57■■□□□ 1.2
CLK3-225ENST00000569063 LRWD1Q9UFC0 647 aa22.57■■□□□ 1.2
CLK3-225ENST00000569063 H3BQV1 296 aa22.56■■□□□ 1.2
CLK3-225ENST00000569063 NCK2O43639 380 aa22.56■■□□□ 1.2
CLK3-225ENST00000569063 HOXA11P31270 313 aaPredicted RBP22.56■■□□□ 1.2
CLK3-225ENST00000569063 PRPHP41219 470 aa22.56■■□□□ 1.2
CLK3-225ENST00000569063 UBE3AQ05086 875 aa22.56■■□□□ 1.2
CLK3-225ENST00000569063 POTEGQ6S5H5 508 aa22.56■■□□□ 1.2
CLK3-225ENST00000569063 ASAP3Q8TDY4 903 aa22.56■■□□□ 1.2
CLK3-225ENST00000569063 POF1BQ8WVV4 589 aa22.56■■□□□ 1.2
CLK3-225ENST00000569063 PABPC5Q96DU9 382 aaKnown RBP22.56■■□□□ 1.2
CLK3-225ENST00000569063 NFKBIZQ9BYH8 718 aa22.56■■□□□ 1.2
CLK3-225ENST00000569063 STK24Q9Y6E0 443 aa22.56■■□□□ 1.2
CLK3-225ENST00000569063 USO1O60763 962 aaKnown RBP22.55■■□□□ 1.2
CLK3-225ENST00000569063 FGF18O76093 207 aa22.55■■□□□ 1.2
CLK3-225ENST00000569063 GLRA2P23416 452 aa22.55■■□□□ 1.2
CLK3-225ENST00000569063 CAPSQ13938 189 aa22.55■■□□□ 1.2
CLK3-225ENST00000569063 LEXMQ3ZCV2 418 aa22.55■■□□□ 1.2
CLK3-225ENST00000569063 MCPH1Q8NEM0 835 aa22.55■■□□□ 1.2
CLK3-225ENST00000569063 HELQQ8TDG4 1101 aa22.55■■□□□ 1.2
CLK3-225ENST00000569063 MRPL9Q9BYD2 267 aaKnown RBP22.55■■□□□ 1.2
CLK3-225ENST00000569063 RAB34Q9BZG1 259 aa22.55■■□□□ 1.2
CLK3-225ENST00000569063 ATG2AQ2TAZ0 1938 aa22.55■■□□□ 1.2
CLK3-225ENST00000569063 KCNA5P22460 613 aa22.54■■□□□ 1.2
CLK3-225ENST00000569063 AXLP30530 894 aa22.54■■□□□ 1.2
CLK3-225ENST00000569063 CCT6AP40227 531 aaKnown RBP22.54■■□□□ 1.2
CLK3-225ENST00000569063 HYAL1Q12794 435 aa22.54■■□□□ 1.2
CLK3-225ENST00000569063 CUL4AQ13619 759 aa22.54■■□□□ 1.2
CLK3-225ENST00000569063 LARP1BQ659C4 914 aaKnown RBP22.54■■□□□ 1.2
CLK3-225ENST00000569063 THNSL1Q8IYQ7 743 aa22.54■■□□□ 1.2
CLK3-225ENST00000569063 POLR3FQ9H1D9 316 aaPredicted RBP22.54■■□□□ 1.2
CLK3-225ENST00000569063 PCDHB2Q9Y5E7 798 aa22.54■■□□□ 1.2
CLK3-225ENST00000569063 ERLIN2O94905 339 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 PLCB3Q01970 1234 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 IL17AQ16552 155 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 ECM1Q16610 540 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 CTC1Q2NKJ3 1217 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 UBXN11Q5T124 520 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 PADI6Q6TGC4 694 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 KCNT2Q6UVM3 1135 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 DTHD1Q6ZMT9 781 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 MRPL10Q7Z7H8 261 aaKnown RBP22.53■■□□□ 1.2
CLK3-225ENST00000569063 LPPQ93052 612 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 PGBD4Q96DM1 585 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 ZNF558Q96NG5 402 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 UHRF1Q96T88 793 aaPredicted RBP22.53■■□□□ 1.2
CLK3-225ENST00000569063 LZTS1Q9Y250 596 aa22.53■■□□□ 1.2
CLK3-225ENST00000569063 INO80B-WBP1J3KQ70 363 aa22.52■■□□□ 1.2
CLK3-225ENST00000569063 TSPAN1O60635 241 aa22.52■■□□□ 1.2
CLK3-225ENST00000569063 CYP11B2P19099 503 aa22.52■■□□□ 1.2
CLK3-225ENST00000569063 IRS1P35568 1242 aa22.52■■□□□ 1.2
CLK3-225ENST00000569063 MBTD1Q05BQ5 628 aa22.52■■□□□ 1.2
CLK3-225ENST00000569063 GLB1LQ6UWU2 654 aa22.52■■□□□ 1.2
CLK3-225ENST00000569063 PPP2R3CQ969Q6 453 aa22.52■■□□□ 1.2
CLK3-225ENST00000569063 GPRC5CQ9NQ84 441 aa22.52■■□□□ 1.2
CLK3-225ENST00000569063 PLXNA4Q9HCM2 1894 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 ARHGEF35A5YM69 484 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 MEIS3P2A8K0S8 358 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 TNFRSF10AO00220 468 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 OFD1O75665 1012 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 CSPG5O95196 566 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 PPM1AP35813 382 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 ATP2C1P98194 919 aaPredicted RBP22.51■■□□□ 1.19
CLK3-225ENST00000569063 NCBP1Q09161 790 aaKnown RBP22.51■■□□□ 1.19
CLK3-225ENST00000569063 AMHR2Q16671 573 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 PDE12Q6L8Q7 609 aaKnown RBP22.51■■□□□ 1.19
CLK3-225ENST00000569063 NOTUMQ6P988 496 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 MAEAQ7L5Y9 396 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 CNNM3Q8NE01 707 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.51■■□□□ 1.19
CLK3-225ENST00000569063 MRPS27Q92552 414 aaKnown RBP22.51■■□□□ 1.19
CLK3-225ENST00000569063 CCDC51Q96ER9 411 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 TLR9Q9NR96 1032 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 CLDND1Q9NY35 253 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 SPG21Q9NZD8 308 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 KIAA1024Q9UPX6 916 aa22.51■■□□□ 1.19
CLK3-225ENST00000569063 NCLP19338 710 aaKnown RBP22.5■■□□□ 1.19
CLK3-225ENST00000569063 LTBRP36941 435 aa22.5■■□□□ 1.19
CLK3-225ENST00000569063 PUS10Q3MIT2 529 aaKnown RBP22.5■■□□□ 1.19
CLK3-225ENST00000569063 LONRF3Q496Y0 759 aa22.5■■□□□ 1.19
CLK3-225ENST00000569063 NOMO2Q5JPE7 1267 aa22.5■■□□□ 1.19
CLK3-225ENST00000569063 KRT79Q5XKE5 535 aa22.5■■□□□ 1.19
CLK3-225ENST00000569063 AGMOQ6ZNB7 445 aa22.5■■□□□ 1.19
CLK3-225ENST00000569063 SNX29Q8TEQ0 813 aa22.5■■□□□ 1.19
CLK3-225ENST00000569063 DDX19AQ9NUU7 478 aaKnown RBP22.5■■□□□ 1.19
CLK3-225ENST00000569063 PUF60Q9UHX1 559 aaKnown RBP22.5■■□□□ 1.19
CLK3-225ENST00000569063 FSCN2O14926 492 aa22.49■■□□□ 1.19
CLK3-225ENST00000569063 GTF2F1P35269 517 aaKnown RBP eCLIP22.49■■□□□ 1.19
CLK3-225ENST00000569063 PBX3P40426 434 aa22.49■■□□□ 1.19
CLK3-225ENST00000569063 ALDH7A1P49419 539 aaKnown RBP22.49■■□□□ 1.19
CLK3-225ENST00000569063 BCAR1P56945 870 aa22.49■■□□□ 1.19
CLK3-225ENST00000569063 KRT17Q04695 432 aa22.49■■□□□ 1.19
CLK3-225ENST00000569063 ADAM15Q13444 863 aa22.49■■□□□ 1.19
CLK3-225ENST00000569063 CDCA2Q69YH5 1023 aaPredicted RBP22.49■■□□□ 1.19
CLK3-225ENST00000569063 ADGRD2Q7Z7M1 963 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms