RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 LOXHD1Q8IVV2 1947 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 TPRP12270 2363 aaKnown RBP15.53■□□□□ 0.08
CLN3-235ENST00000568497 HBP1O60381 514 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 BAG4O95429 457 aaKnown RBP15.53■□□□□ 0.08
CLN3-235ENST00000568497 OR52Z1P0C646 297 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 GRIN1Q05586 938 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 RESTQ13127 1097 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 ECM1Q16610 540 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 TMEM266Q2M3C6 531 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 SPOUT1Q5T280 376 aaKnown RBP15.53■□□□□ 0.08
CLN3-235ENST00000568497 ANO5Q75V66 913 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 LXNQ9BS40 222 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 NOL7Q9UMY1 257 aaKnown RBP15.53■□□□□ 0.08
CLN3-235ENST00000568497 PCDHA12Q9UN75 941 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 CDY2AQ9Y6F7 541 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 MYO10Q9HD67 2058 aa15.53■□□□□ 0.08
CLN3-235ENST00000568497 MBLAC1A4D2B0 266 aaPredicted RBP15.52■□□□□ 0.08
CLN3-235ENST00000568497 MED24O75448 989 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 CSDE1O75534 798 aaKnown RBP15.52■□□□□ 0.08
CLN3-235ENST00000568497 C22orf31O95567 290 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 MGAT3Q09327 533 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 PUM1Q14671 1186 aaKnown RBP eCLIP15.52■□□□□ 0.08
CLN3-235ENST00000568497 LPIN1Q14693 890 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 EPHA7Q15375 998 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 LLGL2Q6P1M3 1020 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 PIGOQ8TEQ8 1089 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 PLIN2Q99541 437 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 CDCA3Q99618 268 aaPredicted RBP15.52■□□□□ 0.08
CLN3-235ENST00000568497 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.52■□□□□ 0.08
CLN3-235ENST00000568497 KIF3AQ9Y496 699 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 CLIC4Q9Y696 253 aa15.52■□□□□ 0.08
CLN3-235ENST00000568497 TBX3O15119 743 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 SLITRK3O94933 977 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 HSP90AA1P07900 732 aaKnown RBP15.51■□□□□ 0.07
CLN3-235ENST00000568497 FGFR4P22455 802 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 SFNP31947 248 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 CLCN5P51795 746 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 ANGPT1Q15389 498 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 ZRSR1Q15695 479 aaKnown RBP15.51■□□□□ 0.07
CLN3-235ENST00000568497 DUSP6Q16828 381 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 KIZQ2M2Z5 673 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 ANKRD54Q6NXT1 300 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 POTEGQ6S5H5 508 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 KSR1Q8IVT5 923 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 SLFN12Q8IYM2 578 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 KIAA0319LQ8IZA0 1049 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 CRIPAKQ8N1N5 446 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 BBXQ8WY36 941 aaPredicted RBP15.51■□□□□ 0.07
CLN3-235ENST00000568497 CEP89Q96ST8 783 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 NAP1L4Q99733 375 aaKnown RBP15.51■□□□□ 0.07
CLN3-235ENST00000568497 AGO3Q9H9G7 860 aaKnown RBP15.51■□□□□ 0.07
CLN3-235ENST00000568497 PCDHB12Q9Y5F1 795 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 PCDHA2Q9Y5H9 948 aa15.51■□□□□ 0.07
CLN3-235ENST00000568497 RRN3P2A6NIE6 340 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 C2CD4DB7Z1M9 353 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 LMNAP02545 664 aaKnown RBP15.5■□□□□ 0.07
CLN3-235ENST00000568497 ASGR2P07307 311 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 STAG3L1P0CL83 205 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 SPATA31C1P0DKV0 1188 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 QARSP47897 775 aaKnown RBP15.5■□□□□ 0.07
CLN3-235ENST00000568497 GATMP50440 423 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 PSMC5P62195 406 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 MRPS6P82932 125 aaKnown RBP15.5■□□□□ 0.07
CLN3-235ENST00000568497 UBE3AQ05086 875 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 ZNF484Q5JVG2 852 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 EFCAB12Q6NXP0 572 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 TAF2Q6P1X5 1199 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 TMEM184AQ6ZMB5 413 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 MAEAQ7L5Y9 396 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 RSPH3Q86UC2 560 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 NPAS4Q8IUM7 802 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 TMEM40Q8WWA1 233 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 TMEM143Q96AN5 459 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 INTS4Q96HW7 963 aaKnown RBP15.5■□□□□ 0.07
CLN3-235ENST00000568497 S1PR5Q9H228 398 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 DAXXQ9UER7 740 aaPredicted RBP15.5■□□□□ 0.07
CLN3-235ENST00000568497 CDH22Q9UJ99 828 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 LRFN2Q9ULH4 789 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 DNAH14Q0VDD8 3507 aa15.5■□□□□ 0.07
CLN3-235ENST00000568497 DMXL1Q9Y485 3027 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 STX6O43752 255 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 P4HBP07237 508 aaKnown RBP15.49■□□□□ 0.07
CLN3-235ENST00000568497 CD52P31358 61 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 TARBP2Q15633 366 aaKnown RBP15.49■□□□□ 0.07
CLN3-235ENST00000568497 SPECC1Q5M775 1068 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 FBXO47Q5MNV8 452 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 PLPP4Q5VZY2 271 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 TSHZ1Q6ZSZ6 1077 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 THNSL1Q8IYQ7 743 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 LINC01599Q8WXQ3 324 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 OSMRQ99650 979 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 NRBP2Q9NSY0 501 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 AKT3Q9Y243 479 aa15.49■□□□□ 0.07
CLN3-235ENST00000568497 VWA3AA6NCI4 1184 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 MARCKSP29966 332 aaPredicted RBP15.48■□□□□ 0.07
CLN3-235ENST00000568497 YWHABP31946 246 aaKnown RBP15.48■□□□□ 0.07
CLN3-235ENST00000568497 TRAPPC10P48553 1259 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 SLC26A2P50443 739 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 ERVFC1P60507 584 aa15.48■□□□□ 0.07
CLN3-235ENST00000568497 KCNC3Q14003 757 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms