RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	KIF5B	P33176	963 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	GPC5	P78333	572 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	TRDN	Q13061	729 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	SNW1	Q13573	536 aa	Known RBP	13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	EFCAB12	Q6NXP0	572 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	TSSK4	Q6SA08	328 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	SPATA31D4	Q6ZUB0	917 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	ZNF280B	Q86YH2	543 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	CMAS	Q8NFW8	434 aa	Predicted RBP	13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	BBX	Q8WY36	941 aa	Predicted RBP	13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	STAM	Q92783	540 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	SECISBP2L	Q93073	1101 aa	Known RBP	13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	NXPE3	Q969Y0	559 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	LNPK	Q9C0E8	428 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	SLC2A4RG	Q9NR83	387 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	FBXO4	Q9UKT5	387 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	NUMBL	Q9Y6R0	609 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	CACNA1I	Q9P0X4	2223 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	LAMP2	P13473	410 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	HOXB3	P14651	431 aa	Predicted RBP	13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	RNASEL	Q05823	741 aa	Known RBP	13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	HTR4	Q13639	388 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	CEP55	Q53EZ4	464 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	LINC01465	Q8N7H1	131 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	ZBTB44	Q8NCP5	570 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	IGDCC4	Q8TDY8	1250 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	SMG7	Q92540	1137 aa	Known RBP	13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	ZNF707	Q96C28	371 aa	Predicted RBP	13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	BCO2	Q9BYV7	579 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	EPC1	Q9H2F5	836 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	PCDHGA2	Q9Y5H1	932 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	EVPL	Q92817	2033 aa		13.35	□□□□□ -0.27
CLK3-222	ENST00000568232	KANSL1L	A0AUZ9	987 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	ANHX	E9PGG2	379 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	MEIS1	O00470	390 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	DHX15	O43143	795 aa	Known RBP	13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	LILRB5	O75023	590 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	OFD1	O75665	1012 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	CYP21A2	P08686	494 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	DARS	P14868	501 aa	Known RBP	13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	CD72	P21854	359 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	PHKA2	P46019	1235 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	PSEN1	P49768	467 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	GPC3	P51654	580 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	ANTXR2	P58335	489 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	SPEM2	Q0P670	501 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	UBXN2B	Q14CS0	331 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	NOMO2	Q5JPE7	1267 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	MIS18BP1	Q6P0N0	1132 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	GET4	Q7L5D6	327 aa	Predicted RBP	13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	TAS1R1	Q7RTX1	841 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	ZNF654	Q8IZM8	581 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	CCDC82	Q8N4S0	544 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	CTCFL	Q8NI51	663 aa	Predicted RBP	13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	MAP7D2	Q96T17	732 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	OCEL1	Q9H607	264 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	MRPL17	Q9NRX2	175 aa	Known RBP	13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	ZSCAN32	Q9NX65	697 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	MAFB	Q9Y5Q3	323 aa	Predicted RBP	13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	SPEG	Q15772	3267 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	ATRX	P46100	2492 aa		13.34	□□□□□ -0.27
CLK3-222	ENST00000568232	FAM170B	A6NMN3	283 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	TEX28	O15482	410 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	DDHD2	O94830	711 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	RXRA	P19793	462 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	SMARCA1	P28370	1054 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	AFF1	P51825	1210 aa	Known RBP	13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	AK2	P54819	239 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	SART3	Q15020	963 aa	Known RBP	13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	LPAL2	Q16609	132 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	GLB1L	Q6UWU2	654 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	PDCD7	Q8N8D1	485 aa	Known RBP	13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	FGF14	Q92915	247 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	BORCS6	Q96GS4	357 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	SHD	Q96IW2	340 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	SCLT1	Q96NL6	688 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	DACT1	Q9NYF0	836 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	ZZEF1	O43149	2961 aa		13.33	□□□□□ -0.28
CLK3-222	ENST00000568232	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	13.32	□□□□□ -0.28
CLK3-222	ENST00000568232		E7EWF7	191 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	TMOD1	P28289	359 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	PARM1	Q6UWI2	310 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	HEATR3	Q7Z4Q2	680 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	RALYL	Q86SE5	291 aa	Known RBP	13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	RAB11FIP4	Q86YS3	637 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	NLRP7	Q8WX94	980 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	NELL1	Q92832	810 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	MAP3K14	Q99558	947 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	DDX23	Q9BUQ8	820 aa	Known RBP	13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	PIDD1	Q9HB75	910 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	LY9	Q9HBG7	655 aa		13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
CLK3-222	ENST00000568232	FAM86B1	E9PN63	330 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	SLC30A4	O14863	429 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	MAGEB2	O15479	319 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	DDAH1	O94760	285 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	GLUD1	P00367	558 aa		13.31	□□□□□ -0.28
CLK3-222	ENST00000568232	FAM86B2	P0C5J1	330 aa		13.31	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 180.3 ms