RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SYT2Q8N9I0 419 aaPredicted RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 KRI1Q8N9T8 703 aaKnown RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 CHAMP1Q96JM3 812 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 ZNF396Q96N95 335 aaPredicted RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 CDX2Q99626 313 aaPredicted RBP10.87□□□□□ -0.67
CLK3-220ENST00000567992 ZBED2Q9BTP6 218 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 SLC28A3Q9HAS3 691 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 POLD4Q9HCU8 107 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 C1orf112Q9NSG2 853 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 RNF19AQ9NV58 838 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 INSL6Q9Y581 213 aa10.87□□□□□ -0.67
CLK3-220ENST00000567992 TCHHQ07283 1943 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 A0A087X0B3 334 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 SPTLC2O15270 562 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 TSPAN1O60635 241 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 PPP6R2O75170 966 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 EDN1P05305 212 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 PLA2G4BP0C869 781 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 GUCY2CP25092 1073 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 TFDP1Q14186 410 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 NAALADL2Q58DX5 795 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 ARSHQ5FYA8 562 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 UBXN11Q5T124 520 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 AXDND1Q5T1B0 1012 aaPredicted RBP10.86□□□□□ -0.67
CLK3-220ENST00000567992 CATSPER4Q7RTX7 472 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 RAD54LQ92698 747 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 YME1L1Q96TA2 773 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 KIFC3Q9BVG8 833 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 TRAIPQ9BWF2 469 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 INO80BQ9C086 356 aaPredicted RBP10.86□□□□□ -0.67
CLK3-220ENST00000567992 CCDC113Q9H0I3 377 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 ELAC1Q9H777 363 aaKnown RBP10.86□□□□□ -0.67
CLK3-220ENST00000567992 CHST12Q9NRB3 414 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 TMEM161AQ9NX61 479 aa10.86□□□□□ -0.67
CLK3-220ENST00000567992 PIN4Q9Y237 131 aaKnown RBP10.86□□□□□ -0.67
CLK3-220ENST00000567992 RBM19Q9Y4C8 960 aaKnown RBP10.86□□□□□ -0.67
CLK3-220ENST00000567992 A0A0U1RQF3 1178 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 LRRIQ4A6NIV6 560 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 B4GALT5O43286 388 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 HIP1RO75146 1068 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 NAMPTP43490 491 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 ERVK-21P61565 698 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 ADGRE1Q14246 886 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 PCBP1Q15365 356 aaKnown RBP eCLIP10.85□□□□□ -0.67
CLK3-220ENST00000567992 ECHDC2Q86YB7 292 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 MYLIPQ8WY64 445 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 KIFAP3Q92845 792 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 CALML4Q96GE6 196 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 CDK5RAP3Q96JB5 506 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 C17orf80Q9BSJ5 609 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 PRDM12Q9H4Q4 367 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 CERS4Q9HA82 394 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 DAXXQ9UER7 740 aaPredicted RBP10.85□□□□□ -0.67
CLK3-220ENST00000567992 XIRP2A4UGR9 3374 aa10.85□□□□□ -0.67
CLK3-220ENST00000567992 CNTNAP2Q9UHC6 1331 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 UNC80Q8N2C7 3258 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 NPHP3-ACAD11A0A0J9YXS1 232 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 TTLL13PA6NNM8 815 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 MEIS3P2A8K0S8 358 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 INO80B-WBP1J3KQ70 363 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 LPXNO60711 386 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 SSBP05455 408 aaKnown RBP eCLIP10.84□□□□□ -0.67
CLK3-220ENST00000567992 STAG3L1P0CL83 205 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 FGFR1P11362 822 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 ZSCAN20P17040 1043 aaPredicted RBP10.84□□□□□ -0.67
CLK3-220ENST00000567992 ARF4P18085 180 aaPredicted RBP10.84□□□□□ -0.67
CLK3-220ENST00000567992 IBSPP21815 317 aaPredicted RBP10.84□□□□□ -0.67
CLK3-220ENST00000567992 RAD51AP2Q09MP3 1159 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 MCM6Q14566 821 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 FAM187BQ17R55 369 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 CLLU1OSQ5K130 101 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 ATL3Q6DD88 541 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 SHC4Q6S5L8 630 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 CMTR2Q8IYT2 770 aaKnown RBP10.84□□□□□ -0.67
CLK3-220ENST00000567992 LARP4BQ92615 738 aaKnown RBP10.84□□□□□ -0.67
CLK3-220ENST00000567992 CLP1Q92989 425 aaKnown RBP10.84□□□□□ -0.67
CLK3-220ENST00000567992 TIPINQ9BVW5 301 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 FZD8Q9H461 694 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 FAM105AQ9NUU6 356 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 DACT1Q9NYF0 836 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 KCND2Q9NZV8 630 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 HCSTQ9UBK5 93 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 RCOR1Q9UKL0 485 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 PCDHB7Q9Y5E2 793 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 MRPL42Q9Y6G3 142 aaKnown RBP10.84□□□□□ -0.67
CLK3-220ENST00000567992 MYO9BQ13459 2157 aa10.84□□□□□ -0.67
CLK3-220ENST00000567992 PLXNA4Q9HCM2 1894 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 RFXAPO00287 272 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 CUTAO60888 179 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 ZNF623O75123 536 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 ERLIN2O94905 339 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 NPTX2P47972 431 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 ZNF131P52739 623 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 BTG3Q14201 252 aaPredicted RBP10.83□□□□□ -0.68
CLK3-220ENST00000567992 PPP2R5AQ15172 486 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 E2F4Q16254 413 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 PAN2Q504Q3 1202 aaKnown RBP10.83□□□□□ -0.68
CLK3-220ENST00000567992 TWF2Q6IBS0 349 aaKnown RBP10.83□□□□□ -0.68
CLK3-220ENST00000567992 TAS1R3Q7RTX0 852 aa10.83□□□□□ -0.68
CLK3-220ENST00000567992 MRPL10Q7Z7H8 261 aaKnown RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms