RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 TMEM173Q86WV6 379 aaPredicted RBP16.73■□□□□ 0.27
CLN3-228ENST00000567804 FAM20AQ96MK3 541 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 ZBP1Q9H171 429 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 IFT122Q9HBG6 1241 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 TBC1D13Q9NVG8 400 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 CDH22Q9UJ99 828 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 MEIS3P2A8K0S8 358 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 DKC1O60832 514 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLN3-228ENST00000567804 ZNF623O75123 536 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 CDKL5O76039 1030 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 GCFC2P16383 781 aaKnown RBP16.72■□□□□ 0.27
CLN3-228ENST00000567804 MRE11P49959 708 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 NPEPPSP55786 919 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 BMS1Q14692 1282 aaKnown RBP16.72■□□□□ 0.27
CLN3-228ENST00000567804 PTPN21Q16825 1174 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 LONRF3Q496Y0 759 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 TPRNQ4KMQ1 711 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 ERICH6BQ5W0A0 696 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 GLB1LQ6UWU2 654 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 SUGP1Q8IWZ8 645 aaKnown RBP16.72■□□□□ 0.27
CLN3-228ENST00000567804 DHX33Q9H6R0 707 aaKnown RBP16.72■□□□□ 0.27
CLN3-228ENST00000567804 NRDE2Q9H7Z3 1164 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 AGPAT5Q9NUQ2 364 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 WRAP73Q9P2S5 460 aaPredicted RBP16.72■□□□□ 0.27
CLN3-228ENST00000567804 COL4A3BPQ9Y5P4 624 aa16.72■□□□□ 0.27
CLN3-228ENST00000567804 CARNS1A5YM72 827 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 TBX3O15119 743 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 OFD1O75665 1012 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 CXCL14O95715 111 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 P4HBP07237 508 aaKnown RBP16.71■□□□□ 0.27
CLN3-228ENST00000567804 GALTP07902 379 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 SP100P23497 879 aaPredicted RBP16.71■□□□□ 0.27
CLN3-228ENST00000567804 CA8P35219 290 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 ITIH3Q06033 890 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 NOMO2Q5JPE7 1267 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 CES5AQ6NT32 575 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 VPS52Q8N1B4 723 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 FBXL6Q8N531 539 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 ZNF579Q8NAF0 562 aaKnown RBP16.71■□□□□ 0.27
CLN3-228ENST00000567804 PRSS33Q8NF86 280 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 SLC7A3Q8WY07 619 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 ASIC4Q96FT7 647 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 IGSF21Q96ID5 467 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 SLKQ9H2G2 1235 aaPredicted RBP16.71■□□□□ 0.27
CLN3-228ENST00000567804 ADAM7Q9H2U9 754 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 GJB4Q9NTQ9 266 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 INPP5FQ9Y2H2 1132 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 PPME1Q9Y570 386 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 IRAK3Q9Y616 596 aa16.71■□□□□ 0.27
CLN3-228ENST00000567804 PLXNA3P51805 1871 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.7■□□□□ 0.26
CLN3-228ENST00000567804 CCNT1O60563 726 aaKnown RBP16.7■□□□□ 0.26
CLN3-228ENST00000567804 CTSAP10619 480 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 XBP1P17861 261 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 POLGP54098 1239 aaPredicted RBP16.7■□□□□ 0.26
CLN3-228ENST00000567804 EPHA7Q15375 998 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 IER5LQ5T953 404 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 PIK3AP1Q6ZUJ8 805 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 DDX53Q86TM3 631 aaKnown RBP16.7■□□□□ 0.26
CLN3-228ENST00000567804 POTEDQ86YR6 584 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 C4orf19Q8IY42 314 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 EXOC8Q8IYI6 725 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 OXER1Q8TDS5 423 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 BCL7CQ8WUZ0 217 aaPredicted RBP16.7■□□□□ 0.26
CLN3-228ENST00000567804 AUTS2Q8WXX7 1259 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 HAS1Q92839 578 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 PGBD4Q96DM1 585 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 CEP170P1Q96L14 293 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 NECTIN4Q96NY8 510 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 NAP1L4Q99733 375 aaKnown RBP16.7■□□□□ 0.26
CLN3-228ENST00000567804 LXNQ9BS40 222 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 POMKQ9H5K3 350 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 DNAJB4Q9UDY4 337 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 NR2E1Q9Y466 385 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 PCDHB2Q9Y5E7 798 aa16.7■□□□□ 0.26
CLN3-228ENST00000567804 B4GALT3O60512 393 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 PFKFB2O60825 505 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 DTNBO60941 627 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 RFC5P40937 340 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 RNASELQ05823 741 aaKnown RBP16.69■□□□□ 0.26
CLN3-228ENST00000567804 GIT2Q14161 759 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 EARS2Q5JPH6 523 aaKnown RBP16.69■□□□□ 0.26
CLN3-228ENST00000567804 AGMOQ6ZNB7 445 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 SRGAP1Q7Z6B7 1085 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 PRPF31Q8WWY3 499 aaKnown RBP16.69■□□□□ 0.26
CLN3-228ENST00000567804 PSPC1Q8WXF1 523 aaKnown RBP16.69■□□□□ 0.26
CLN3-228ENST00000567804 TMEM143Q96AN5 459 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 GBP3Q9H0R5 595 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 MINDY3Q9H8M7 445 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 TSHZ2Q9NRE2 1034 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 DZANK1Q9NVP4 752 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 TPCN1Q9ULQ1 816 aa16.69■□□□□ 0.26
CLN3-228ENST00000567804 C2CD4DB7Z1M9 353 aa16.68■□□□□ 0.26
CLN3-228ENST00000567804 GAS2O43903 313 aaKnown RBP16.68■□□□□ 0.26
CLN3-228ENST00000567804 EPCAMP16422 314 aa16.68■□□□□ 0.26
CLN3-228ENST00000567804 YWHABP31946 246 aaKnown RBP16.68■□□□□ 0.26
CLN3-228ENST00000567804 MTHFRP42898 656 aa16.68■□□□□ 0.26
CLN3-228ENST00000567804 SLC11A1P49279 550 aa16.68■□□□□ 0.26
CLN3-228ENST00000567804 SPIRE1Q08AE8 756 aa16.68■□□□□ 0.26
CLN3-228ENST00000567804 LAMTOR4Q0VGL1 99 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms