RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CRIPAKQ8N1N5 446 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 INO80BQ9C086 356 aaPredicted RBP21.62■■□□□ 1.05
CLN3-225ENST00000566824 KCNH3Q9ULD8 1083 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 HPSEQ9Y251 543 aa21.62■■□□□ 1.05
CLN3-225ENST00000566824 YBX2Q9Y2T7 364 aaKnown RBP21.62■■□□□ 1.05
CLN3-225ENST00000566824 TSPAN1O60635 241 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 EFCAB14O75071 495 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 UPP2O95045 317 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 SFPQP23246 707 aaKnown RBP eCLIP21.61■■□□□ 1.05
CLN3-225ENST00000566824 HOXA11P31270 313 aaPredicted RBP21.61■■□□□ 1.05
CLN3-225ENST00000566824 SV2BQ7L1I2 683 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 DNAJC19Q96DA6 116 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 SLC9A7Q96T83 725 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 FTHL17Q9BXU8 183 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 NFKBIZQ9BYH8 718 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 PBX4Q9BYU1 374 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 CCDC113Q9H0I3 377 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 RGS18Q9NS28 235 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 FAM13BQ9NYF5 915 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 KCND2Q9NZV8 630 aa21.61■■□□□ 1.05
CLN3-225ENST00000566824 DENND3A2RUS2 1198 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 C9IYK1 514 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 ARHGEF15O94989 841 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 AMHP03971 560 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 FXR1P51114 621 aaKnown RBP eCLIP21.6■■□□□ 1.05
CLN3-225ENST00000566824 NDUFA8P51970 172 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 TAS1R3Q7RTX0 852 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 GRAMD1CQ8IYS0 662 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 PHOSPHO2Q8TCD6 241 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 DDX12PQ92771 950 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 TOP1MTQ969P6 601 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 CPB2Q96IY4 423 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 IFT74Q96LB3 600 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 DRC1Q96MC2 740 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 TIPINQ9BVW5 301 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 AGPAT5Q9NUQ2 364 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 SERTAD1Q9UHV2 236 aa21.6■■□□□ 1.05
CLN3-225ENST00000566824 PIN4Q9Y237 131 aaKnown RBP21.6■■□□□ 1.05
CLN3-225ENST00000566824 FAM237AA0A1B0GTK4 181 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 A0A1W2PQ27 194 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 A0A1W2PQ64 194 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 A0A1W2PQD8 194 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 LCHNA4D1U4 455 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 CCDC169A6NNP5 214 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 SLC16A4O15374 487 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 KRT18P05783 430 aaKnown RBP21.59■■□□□ 1.05
CLN3-225ENST00000566824 PLS3P13797 630 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 LIG1P18858 919 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 CASP1P29466 404 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 SMAD3P84022 425 aaKnown RBP21.59■■□□□ 1.05
CLN3-225ENST00000566824 ODR4Q5SWX8 454 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 UBXN11Q5T124 520 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 CDR2LQ86X02 465 aaPredicted RBP21.59■■□□□ 1.05
CLN3-225ENST00000566824 FSIP1Q8NA03 581 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 DEPTORQ8TB45 409 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 FZD8Q9H461 694 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 KBTBD4Q9NVX7 518 aa21.59■■□□□ 1.05
CLN3-225ENST00000566824 ACTN4O43707 911 aaKnown RBP21.58■■□□□ 1.05
CLN3-225ENST00000566824 GJB5O95377 273 aa21.58■■□□□ 1.05
CLN3-225ENST00000566824 GATMP50440 423 aa21.58■■□□□ 1.05
CLN3-225ENST00000566824 ZNF131P52739 623 aa21.58■■□□□ 1.05
CLN3-225ENST00000566824 FAM189BP81408 668 aa21.58■■□□□ 1.05
CLN3-225ENST00000566824 PPP2R5AQ15172 486 aa21.58■■□□□ 1.05
CLN3-225ENST00000566824 LONRF3Q496Y0 759 aa21.58■■□□□ 1.05
CLN3-225ENST00000566824 SPRED2Q7Z698 418 aa21.58■■□□□ 1.05
CLN3-225ENST00000566824 IQUBQ8NA54 791 aa21.58■■□□□ 1.05
CLN3-225ENST00000566824 ODF2LQ9ULJ1 636 aa21.58■■□□□ 1.05
CLN3-225ENST00000566824 FNDC1Q4ZHG4 1894 aaPredicted RBP21.58■■□□□ 1.05
CLN3-225ENST00000566824 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.57■■□□□ 1.04
CLN3-225ENST00000566824 GADD45BO75293 160 aaPredicted RBP21.57■■□□□ 1.04
CLN3-225ENST00000566824 ARF4P18085 180 aaPredicted RBP21.57■■□□□ 1.04
CLN3-225ENST00000566824 SARSP49591 514 aaKnown RBP21.57■■□□□ 1.04
CLN3-225ENST00000566824 SLC24A5Q71RS6 500 aa21.57■■□□□ 1.04
CLN3-225ENST00000566824 ZBTB8OSQ8IWT0 167 aa21.57■■□□□ 1.04
CLN3-225ENST00000566824 FIZ1Q96SL8 496 aa21.57■■□□□ 1.04
CLN3-225ENST00000566824 NTPCRQ9BSD7 190 aaKnown RBP21.57■■□□□ 1.04
CLN3-225ENST00000566824 NKX2-4Q9H2Z4 354 aa21.57■■□□□ 1.04
CLN3-225ENST00000566824 ZHX3Q9H4I2 956 aa21.57■■□□□ 1.04
CLN3-225ENST00000566824 KMT5AQ9NQR1 393 aa21.57■■□□□ 1.04
CLN3-225ENST00000566824 ARHGAP28Q9P2N2 729 aa21.57■■□□□ 1.04
CLN3-225ENST00000566824 SZT2Q5T011 3432 aa21.57■■□□□ 1.04
CLN3-225ENST00000566824 FAM13AO94988 1023 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 PRKCBP05771 671 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 ZSCAN20P17040 1043 aaPredicted RBP21.56■■□□□ 1.04
CLN3-225ENST00000566824 ATF7P17544 494 aaPredicted RBP21.56■■□□□ 1.04
CLN3-225ENST00000566824 DNAJB2P25686 324 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 DMP1Q13316 513 aaPredicted RBP21.56■■□□□ 1.04
CLN3-225ENST00000566824 NT5DC1Q5TFE4 455 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 PPP4R3CPQ6ZMV5 832 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 MYCT1Q8N699 235 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 TMEM161BQ8NDZ6 487 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 SPIRE2Q8WWL2 714 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 MRPS27Q92552 414 aaKnown RBP21.56■■□□□ 1.04
CLN3-225ENST00000566824 ZBED2Q9BTP6 218 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 EIF2AQ9BY44 585 aaKnown RBP21.56■■□□□ 1.04
CLN3-225ENST00000566824 C2orf40Q9H1Z8 148 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 CHST12Q9NRB3 414 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 RNF19AQ9NV58 838 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 PCDHA11Q9Y5I1 949 aa21.56■■□□□ 1.04
CLN3-225ENST00000566824 MEIS3P2A8K0S8 358 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms